4 Structural Science – Equipment and Software for Industry
Submitting Institution
University of DurhamUnit of Assessment
ChemistrySummary Impact Type
TechnologicalResearch Subject Area(s)
Physical Sciences: Other Physical Sciences
Chemical Sciences: Inorganic Chemistry, Physical Chemistry (incl. Structural)
Summary of the impact
Durham Chemistry has a long history of research in cutting edge
crystallographic methods and
innovative instrument design which has led to the commercialisation of
scientific apparatus and
software with significant sales value. Durham-developed apparatus and
crystallographic software
are used globally by both industry and academia. Autochem2, for example,
is sold exclusively to
Agilent via the spin-out company OlexSys, and hundreds of researchers rely
on Durham's
contributions to the Topas software pacakge. Crystallographic research for
pharmaceutical and
other companies, research-based consultancy, commercial analytical
services and provision of
international PhD+ level training schools have led to further significant
impact.
Underpinning research
Research in the development of crystallographic methods at Durham has
been carried out by the
groups of Professor Judith A K Howard (JAKH, 1991-), Dr. Andres Goeta
(AEG, 1998-2011dc),
Professor John S.O. Evans (JSOE, 1998-) and Dr Ivana Evans (IRE, 1999-).
Their work forms
part of our Research Grouping in Materials Synthesis and Structure (MSS),
and is supported and
exploited by others working in structural science and, in particular,
solid state NMR.
Durham Chemistry has a strong focus on the synthesis and understanding of
functional materials.
Examples include superconductors, molecular magnets, materials with
electronic and magnetic
phase transitions, gas storage materials, structural materials and
molecular switches. In order to
understand, develop and exploit structure-property relationships in these
materials, high resolution
X-ray-derived structural information is required across a wide temperature
range. Low
temperatures also provide higher quality structural information than
ambient studies and allow
study of otherwise unstable systems. JAKH therefore designed, constructed
and developed the
unique Fddd diffractometer [1] integrating closed cycle cryo-refrigeration
and a high intensity X-ray
beam to enable crystallographic studies of very small crystals down to 9
K. Single crystal X-ray
diffraction studies in the UK had been restricted previously to
temperatures above 100K using
liquid nitrogen temperatures as coolant. The unique facilities developed
in Durham enabled low
temperature studies on a number of important systems with exploitable
macroscopic properties,
but, using a point detector, experiments were slow and only a limited
number of temperatures
could be studied.
The advent of CCD detectors for laboratory diffractometers provided a
solution to the speed
problem, but the data quality obtainable at sub 100 K temperatures was
severely limited by the
complex cryostat environment, with heat shields and windows severely
attenuating the beam and
giving rise to their own strong X-ray scatter. JAKH therefore initiated
research into the development
of an open-flow cooling device, similar to the now ubiquitous liquid
nitrogen devices, but capable of
reaching much lower temperatures [F1]. The cryostat developed, the HeliX,
allowed the first rapid
full structural investigations of novel systems maintained at sub 100 K
temperatures in an open
environment, allowing rapid data acquisition. The design also enabled
laser excitation of samples
allowing full structural investigations of thermally trapped, optically
induced, excited spin state
complexes [2,3].
Many of the new materials prepared and studied in Durham are in
polycrystalline (powdered) form,
but there is still a need to study their low temperature structural
properties. Examples of materials
include those showing negative thermal expansion behaviour [F2],
electronic phase transitions or
light-induced changes. The need to study these materials [3,4] led to [F3]
research by JSOE/AEG
to develop and exploit the pHeniX cryostat for powder diffraction. The
design incorporated novel
features to allow operation on a range of lab-based instruments with a
variety of different sample
types.
The experimental structural and materials science undertaken at Durham
has required parallel
development of computational methods and software tools. In the area of
single crystal diffraction
the JAKH group has an extensive research programme in the development of
computational tools
for data analysis. With EPSRC funding they designed and delivered an
innovative, future-proof,
toolbox based software suite (Olex2) based on Python-integration of a
series of small modules [F4]
using fit-for-purpose programming codes, informed by X-ray crystallography
expertise. This
approach allows the efficient use of established routines and the parallel
development of new
algorithms [5]. In the area of powder diffraction, JSOE has been involved
in the development of the
Topas suite of software and its application for novel data analysis since
the late 1990s. He has
developed data analysis methods for parametric fitting of huge bodies of
diffraction data, for
analysing neutron and energy dispersive diffraction data, and
distortion-mode modelling of
functional materials; these are used by industry and academics [6,7].
References to the research
[1] R.C.B.Copley, A.E. Goeta, C.W. Lehmann, J.C. Cole, D.S. Yufit, J.A.K.
Howard and J.M.
Archer, "The Fddd four-circle diffractometer for single-crystal X-ray
studies at temperatures
down to 9K", J. Appl. Cryst., 1997, 30, 413-417. DOI:
10.1107/S0021889897002525. [8
citations]
[2] A.E. Goeta, L.K. Thompson, C.L. Sheppard, S.T. Tandon, C.W. Lehmann,
J. Cosier, C.
Webster and J.A.K. Howard, "[Cu2{1,4-bis[(3-methyl-2-pyridyl)amino]-phthalazine-H}(N3)3]
at
40K", Acta Cryst., 1999, C55, 1243-1246. DOI:
10.1107/S0108270199005648. [19]
[3] V.A. Money, I.R. Evans, M.A. Halcrow, A.E. Goeta and J.A.K. Howard,
"Light induced excited
high spin-state trapping in [FeL2](BF4)2
(L = 2,6-di(pyrazol-1-yl)pyridine)", Chem. Commun.,
2003, 158-9. DOI: 10.1039/B210146G. [53]
[4] S. Allen and J.S.O. Evans, "The kinetics of oxygen migration in
ZrWMoO8", J. Mater. Chem.,
2004, 14,151-156, RSC Hot Article. DOI: 10.1039/B310137A.
[18]
[5] O.V. Dolomanov, L.J. Bourhis, R.J. Gildea, J.A.K. Howard, H.
Puschmann, "OLEX2: A
complete structure solution, refinement and analysis program", J. App.
Cryst., 2009, 42, 339-341.
DOI:10.1107/S0021889808042726. [650]
[6] A.A. Coelho, J.S.O. Evans, I.R. Evans, A. Kern, and S. Parsons, "The
TOPAS symbolic
computation system", Powder Diffraction, 2011, 26, S22-S25. DOI:
10.1154/1.3661087. [8]
[7] G.W. Stinton, J.S.O. Evans, "Parametric Rietveld refinement", J.
Appl. Cryst., 2007, 40, 87-95.
DOI:10.1107/S0021889806043275. [40]
Selected research funding:
[F1] EPSRC Grant GR/L16903/01 (1996-1999), £180K, JAKH. "Open Heart
Crystallography at
(virtually) Helium Temperatures".
[F2] EPSRC Grant GR/N00524 (2000-2003), £270K, JSOE. "Negative Thermal
Expansion and
Oxygen Mobility in Framework Materials".
[F3] EPSRC GR/M35222 (1999-2002), £121K. JSOE, JAKH, & AEG. Joint
Research Equipment
Initiative grant leading to development of the pHeniX cryostat.
[F4] EPSRC EP/C536274/1 (2005-2011), £1.2M (£943K Durham). "Age Concern;
Crystallographic Software for the Future" led to Olex2, spin-out OlexSys
and other outputs.
The quality of the research described in section 1 is evidenced in
several ways. Much of it was
enabled by peer-reviewed EPSRC grants (listed F1-F4) above. When required,
final reviewed
reports on these received outstanding/internationally-leading grades.
Several of the papers cited
above were returned in previous RAE exercises and, we infer, were graded
> 2*. Several of the
references listed have also been highly cited. Reference [5] has been
cited over 850 times and
reference [7] over 40 times and we have received numerous invitations to
present research at
international meetings. Our software user base (>5000 for single
crystal, >650 for jEdit/Topas
Academic) attests to the quality of these research-derived packages.
Details of the impact
Research at Durham aimed at developing an open-flow cryostat capable of
cooling below liquid
nitrogen temperatures [1] was performed as part of an EPSRC-funded project
in collaboration with
Oxford Cryosystems (OC). OC is an Oxfordshire based company which employs
20 staff and has
an annual turnover of £3-£3.5M. The prototype was completed in 1998 and
the commercial
version was launched by OC as the HeliX at the IUCr Congress in Glasgow,
1999. IP for the Helix
is owned by OC who have sold around 20 units in the 2008-2013 period to
academic institutions
and central facilities globally [Im1].
The successful development of the HeliX suggested similar technology
could provide a 12-310 K
cryostat for powder diffraction experiments, filling a market gap for
apparatus that was (a) easy to
use and low maintenance, (b) compatible with a range of diffractometer
configurations and (c)
usable by those without cryogen expertise and did not require expensive
liquid He. A prototype
pHeniX powder cryostat [4] was co-developed with OC, installed in Durham
in 2002, and the
commercial version launched later that year. pHeniX units have been sold
to industry in South
Korea, China, United States, mainland Europe and the UK as well as to
national facilities and
academic institutions directly by OC and through the X-ray manufacturers
PANalytical and Bruker
AXS. Approximately eight units are sold annually. The Director of Sales
and Marketing at Oxford
Cryosystems, said: "it is fair to say that without the research excellence
of Durham University, we
would not be manufacturing and selling these cooling devices as we are
today. OC's product range
has expanded greatly over the past ten years and being able to offer these
products is very
important in allowing us to move into new applications." [Im1]
EPSRC "Age Concern" funding to JAKH enabled development of Olex2 software
[5, Im2], a
modern, powerful and easy to use package for the solution, analysis and
refinement of single
crystal X-ray data. The open source version is available free of charge
from the internet and has
been downloaded extensively, providing an estimation that there are over
5000 users worldwide.
The original paper has been cited > 650 times, demonstrating impact on
the global academic
community and in training students, future academics and industrial
scientists. Future development
of Olex2 has been secured through the Durham spinout company OlexSys
[Im2]. OlexSys was
established in December 2010 (Company No 07465154) with the legal
assistance of Durham
University Business and Innovation Services. It has been trading since
June 2011 has a growing
turnover, employs full and part time staff and is chaired by JAKH. OlexSys
has two complementary
and parallel work strands. To keep Olex2 at the scientific cutting-edge
they maintain and develop
the open source version for and on behalf of the global academic
community. They also provide
bespoke software solutions for industry and have commercial contracts with
instrument
manufacturers Agilent, Rigaku and the Cambridge Crystallographic Data
Centre.
One commercial contract is with Agilent [Im3], who install Olex2 with all
of their X-ray systems
(each typically costing > ~£300K). Agilent commissioned OlexSys to
create the exclusive bespoke
commercial product AutoChem. Autochem provides automated, intelligent,
real-time structure
solution and refinement during data collection. Although Agilent company
policy states that specific
sales figures can't be released, the University believes a significant
number of licences have been
sold to date. A major update, Autochem2.0 was commissioned in 2011. It is
derived from Durham
research and OlexSys developments, and described on the Agilent website
as: "The ultimate
productivity tool for chemical crystallography, AutoChem — now as
AutoChem2.0 — provides fast,
fully automated structure solution and refinement during data collection.
Developed exclusively for
Agilent by the authors of Olex2, AutoChem2.0 is a seamlessly integrated,
optional plug-in for
CrysAlisPro, offering an advanced approach for automatic structure
determination, and now with
an even higher rate of success."
JSOE has been heavily involved in the development of Topas — the leading
software for analysis of
powder diffraction data and Rietveld refinement (e.g. [6]). He has worked
closely with Alan Coelho
and Bruker in implementing new ideas and methodologies in this software
[Im4,5]. In particular his
methods for analysing variable temperature/time/chemical environment data
are used worldwide
and the time-of-flight neutron and distortion mode/magnetism methods he
introduced underpin
numerous experiments at UK central facilities (e.g. [7]). The jEdit
interface he developed and
distributes for "power-use" of the software is used by many academic and
industrial groups, and
Durham has trained in excess of 500 people in its use at predominantly
industrial workshops
worldwide (USA, Germany, Italy, UK, Australia). Many of these innovations
are now incorporated
in the commercial version of Topas [Im4], which has a list price around
£10K. Sales figures for
Topas are commercially sensitive information that Bruker cannot release.
Many licenses have
been sold and that their distribution would be approximately 50:50 between
industry and academia.
Many copies of the academic version have been sold to groups worldwide
(80% in REF period)
[Im5]. The Topas community wiki site and discussion forum is run through
Durham
(topas.dur.ac.uk/dokuwiki.php) and has a vibrant and expanding community
with about 300
members. This includes industrial members from industries in the chemicals
(e.g. Johson Mathey,
BASF), cement, pharmaceutical and mining sectors.
Our structural expertise also has significant and direct impact on
industry via the
service/consultancy work we perform under the auspices of the departmental
services. Within the
REF period the Department has performed many single crystal, powder
diffraction and related
analyses. We have also supported industrial users with structure-related
problems via Durham's
industry-funded solid state NMR service, helping 49 companies with work
between January 2008
and July 2013.
The impact of all our crystallographic research is enhanced by regular
international training schools
run in Durham [Im6], e.g. the Powder Diffraction and Rietveld refinement
School (biennial since
2004) and BCA X-Ray Single Crystal Structure Analysis Intensive Training
School (biennial in
Durham since 1995), targeting both academics and industry on an
international scale. Since 2008
the X-ray Single crystal school has trained over 250 participants over 3
schools held biennially and
the powder school has trained >200 delegates from around the world. An
overseas PhD student at
the 2008 powder school stated "I think it was one of the best teaching
courses I have ever
attended" and a UK academic "I would have no hesitation in recommending it
to any academics or
students....there is a huge need for this in the UK"; the International
Union of Crystallography
powder commission described it as a "school others should aspire to". The
problem-based
learning example set for the powder school features many examples derived
from Durham
research ( http://www.dur.ac.uk/john.evans/topas_workshop/pcg_workshop_menu.htm
) to help
train others in our methods.
Sources to corroborate the impact
[Im1] Helix and pHenix: Director of Marketing & Sales, Oxford
Cryosystems
(http://www.oxcryo.com; http://www.oxcryo.com/coolers-for-diffraction/n-helix/;
http://www.oxcryo.com/coolers-for-diffraction/phenix/)
[Im2] Olex2: Olex2 CEO — OlexSys (http://www.olexsys.org);
UK registered company 07465154.
[Im3] Olex2 and Autochem2.0: Oliver Presley, Program Marketing Manager
(XRD), Agilent
(www.agilent.com). (http://www.chem.agilent.com/en-US/products-services/software-
informatics/autochem/Pages/default.aspx).
[Im4] Topas: Head of Global Product Management XRD, Bruker AXS has
provided information
confirming JSOE's contribution to Topas. See also: http://www.bruker.com/products/x-ray-diffraction-and-elemental-analysis/x-ray-diffraction/xrd-software/applications/xrd-software-applications/topas.html.
[Im5] Topas Academic: Alan Coelho has provided information confirming
TOPAS sales and
impact. http://www.topas-academic.net;
http://www.dur.ac.uk/john.evans/topas_academic/topas_main.htmtopas.dur.ac.uk/dokuwiki.php
[Im6] Powder diffraction and Rietveld refinement school: EPSRC proposals,
testaments of
previous delegates and comments of referees in school funding
applications.