Design of a New Herbicide to Underpin Programmes of Sustainable Agriculture
Submitting Institution
University of SheffieldUnit of Assessment
Biological SciencesSummary Impact Type
TechnologicalResearch Subject Area(s)
Chemical Sciences: Analytical Chemistry
Biological Sciences: Biochemistry and Cell Biology
Agricultural and Veterinary Sciences: Crop and Pasture Production
Summary of the impact
Herbicides are essential to efficient agriculture to boost crop yield and
maintain food supplies in the face of growing demand. However, their use
is threatened by a rapid rise in herbicide resistance, a problem that is
exacerbated by the limited range of compounds currently in use. In
particular, resistance to glyphosate, the compound that currently
dominates the market with sales in excess of $4 billion per annum, has
emerged far more rapidly than had been predicted. For over twenty years
the Sheffield group has worked in collaboration with Syngenta (a world
leading agrochemical business) on the development of a novel herbicide
targeting IGPD, an enzyme of histidine biosynthesis, to provide an
alternative to glyphosate. Over that time Syngenta invested approximately
$20M in synthesis and testing of custom chemicals, including conducting
worldwide field trials on the lead compound. The Sheffield group
determined the structure of IGPD with representative inhibitors which has
guided programmes of lead optimisation and greatly informed company
decisions on the scope for commercial development. The impact relates to
commerce, production and employment, and has significant reach given the
vital importance of herbicide development to programmes of sustainable
agriculture on a global scale.
Underpinning research
The Structural Studies group in Sheffield has extensive expertise in the
use of X-ray crystallography to explore systems of fundamental and medical
importance in atomic detail. A major programme of protein structure
determination led by Professor David Rice concerns the design of novel
herbicides which are essential for efficient agriculture to maintain
yield. The use of glyphosate as a contact-inactivated herbicide has become
important in programmes of sustainable agriculture, allowing the
development of no-till farming to reduce soil loss through erosion
resulting from ploughing. However, the emergence of glyphosate resistance
threatens the current use and further development of this technology with
potentially catastrophic results.
In collaboration with Syngenta, in a programme spanning more than twenty
years, the Sheffield group has determined multiple structures of
imidazoleglycerol-phosphate dehydratase (IGPD), an enzyme of histidine
biosynthesis and a validated target for herbicide discovery [R1-4].
Importantly, their results showed that IGPD assembles as a 24 subunit
protein (a `24mer') in its native state, rather than a three subunit
protein (a trimer) as Syngenta scientists had believed, and that this
assembly requires metal ions [R3,R4]. These findings led
directly to the company redesigning their IGPD preparation strategy and
obtaining improved purity and activity of the enzyme for inhibitor assays.
This allowed the Sheffield and Syngenta research teams to work together to
develop novel herbicides.
In collaboration with Dr Tim Hawkes, a senior scientist at Syngenta,
Rice's team has analysed the structure/function relationships of a family
of experimental herbicides targeting IGPD, including potent triazole
phosphonates. The research at Sheffield has led to a deep understanding of
the enzyme's mechanism and stimulated ideas on the development of new
inhibitors as part of a programme of rational design. To complete this
programme Syngenta employed and trained a team of synthetic chemists who
supplied a panel of over 100 custom synthesised compounds (not publicly
available) for Sheffield to test. The results from Sheffield prompted
large scale synthesis of the lead compound, and testing in glasshouse and
field scale trials for its herbicidal potency and weed specificity The
outcome of their experiments have influenced company decisions on its
commercial development.
More recently, with co-funding from BBSRC and Syngenta, the joint project
has been expanded to include collaborations with Simon Jones (Chemistry,
Sheffield) to develop and synthesise, together with Syngenta chemists, a
new series of inhibitors, previously not explored, that have been
suggested by novel findings from the crystallography programme. This is
designed to produce even more effective herbicides, perhaps with an
altered range of weed target specificity.
Due to the commercial sensitivity of the project, the data directly
related to the design and mode of binding of the novel compounds are not
yet publicly available, although the underpinning research has been
published in four research papers in the period 1995-2005 [R1-R4].
References to the research
R1 Glynn, S.E., Baker, P.J., Sedelnikova, S.E., Davies, C.L.,
Eadsforth, T.C., Levy, C.W., Rodgers, H.F., Blackburn, G.M., Hawkes, T.R.,
Viner, R., Rice, D.W. (2005) Structure and mechanism of
imidazoleglycerol-phosphate dehydratase. Structure, 13: 1809-17.
doi: 10.1016/j.str.2005.08.012
R2 Glynn, S.E., Baker, P.J., Sedelnikova, S.E., Levy, C.W.,
Rodgers, H.F., Blank, J., Hawkes, T.R., Rice, D.W. (2005) Purification,
crystallization and preliminary crystallographic analysis of Arabidopsis
thaliana imidazoleglycerol-phosphate dehydratase. Acta
Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 61(8): 776-8.
doi: 10.1107/S1744309105022451
R3 Wilkinson, K.W., Baker, P.J., Rice, D.W., Rodgers, H.F.,
Stillman, T.J., Hawkes, T., Thomas, P., Edwards, L. (1995).
Crystallization and analysis of the subunit assembly and quaternary
structure of imidazoleglycerol phosphate dehydratase from Saccharomyces
cerevisiae. Acta Crystallogr. D Biol. Crystallogr.,
51:845-7.
R4 Hawkes, T.R., Thomas, P.G., Edwards, L.S., Rayner, S.J.,
Wilkinson, K.W., Rice, D.W. (1995). Purification and characterization of
the imidazoleglycerol-phosphate dehydratase of Saccharomyces
cerevisiae from recombinant Escherichia coli. Biochem J.,
306: 385-97.
Details of the impact
Overview
Scientific research carried out in Sheffield has informed commercial
decisions on the research and development of a novel herbicide, making a
direct contribution to its identification and potential development by a
global commercial agrichemical company. The results from Sheffield
persuaded the company to invest in a different research direction to
design this novel herbicide, and to conduct in-house glasshouse trials and
field trials in Europe and both North and South America. The company
involved (Syngenta) has global reach ($9.2 billion sales, employing over
21,000 people in more than 90 countries). Glyphosate, the product that the
novel herbicide aims to replace, plays a critical role in maintaining a
large percentage of the world's food supply but its use is threatened by
the emergence of resistance [S4-S7]. Glyphosate currently dominates
the world herbicide market with sales in excess of $4 billion per annum
and the development of a novel product to replace it would have worldwide
implications.
Impact on Commerce
Syngenta has so far invested approximately $20M in the development of a
herbicide targeting IGPD to identify a suitable replacement for
glyphosate. The work of the Sheffield group has led to the determination
of the structure of IGPD and a deep understanding of the
structure/activity relationships of different classes of lead compounds
that have been developed by Syngenta. The structural data were key to
decisions made by the company to continue research in this area.
Over the REF period, and based on results obtained in Sheffield, Syngenta
custom synthesised kilograms of the lead compound and recently (2010-12)
performed glasshouse trials followed by a series of field trials (in North
America, South America and Switzerland) to test the herbicidal efficacy of
the lead compound. This is one of the key steps in the commercial and
regulatory pathway prior to marketing of the product, and equivalent to
the stage of clinical trials in the medical arena. The costs of performing
such trials are commercially sensitive but are significant.
The results of these trials against their panel of resistant weed
cultivars (which are also commercially sensitive) has had a direct outcome
on both the company's decision whether to take the product through to
market and on the direction of future research in this area. Thus, the
Sheffield research programme has had a direct influence on the commercial
decisions of a major global company. In a supporting letter [S1],
Dr Tim Hawkes, who leads research into weed control solutions at Syngenta,
confirms that work at the University of Sheffield "exerted a
considerable and direct influence on our work here at Syngenta" and
"helped to lead Syngenta into a programme of chemistry aimed towards
new inhibitors" and that "over the last few years Syngenta has
certainly invested multi-million pounds in the IGPD area".
As a result of the discoveries by the Sheffield team, over the REF period
Syngenta invested considerable expenditure on chemical consumables and the
employment and training of several synthetic chemists. Syngenta also
co-funded the IGDP structural studies in Sheffield, resulting in the
employment and training of a team of research scientists, and co-funded
three PhD students at the University [S2, S3].
Ongoing Impact on Commercial Research and Development
The research collaboration between Sheffield and Syngenta represented a
rational-design approach to the development of novel herbicides in which
precise knowledge of enzyme structure/activity relationships is used to
model/design/screen potential inhibitors. This approach has influenced
on-going work between Sheffield and the commercial partner, and the
collaboration continues to influence ideas for further lead compound
optimisation in an on-going project funded by BBSRC and Syngenta [S3].
Sources to corroborate the impact
Although the results of the field trials and the research directly
pertaining to the impact are commercially sensitive (and thus not publicly
available), documentary evidence is available from Syngenta to corroborate
the nature and significance of the work and the impact that it has had on
the commercial decisions made by the company.
S1 A letter from a Senior Syngenta Fellow, a lead
scientist in weed control strategies, outlining the `considerable and
direct influence' of the work in Sheffield on Syngenta's investment
in IGPD research and field trials, is available.
S2 Research Collaboration Agreement (2009) between Sheffield and
Syngenta setting out details of milestone payments from Syngenta to
Sheffield during commercial development, and royalty payments on
commercialisation, is available.
S3 Syngenta and research council co-funding for a team of structural
biologists studying IGPD in Sheffield (further details at http://www.bbsrc.ac.uk/pa/grants/).
-
Towards the exploitation of IGPD as a target for herbicide
development - D W Rice and P J Baker. BBSRC Industrial Partnership
award with Syngenta (BB/C518065/1) April 2005 to March 2008. Employed 3
researchers. £233k (Syngenta contribution approx. £50k contribution in
kind for provision of equipment/materials).
-
The Development of a Novel Herbicide - D W Rice, P J Baker and
S Jones. BBSRC Industrial Partnership award with Syngenta (BB/I003703/1)
Jan 2011 to June 2014. Employs 3 researchers. £717k (Syngenta
contribution approx. £111k).
- Three Research Council CASE PhD training grants (Collaborative Awards
in Science and Engineering) from 1998-2011: Claudine Bisson (2007 to
2011), Thomas Eadsforth (2004- 2008), Kay Grabham (1988-1991). Syngenta
contribution approx. £200k (approx. 20k per student per annum).
S4 Duke, S.O., Powles, S.B. (2009) Glyphosate-resistant crops and
weeds: now and in the future AgBioForum, 12 (3&4), 346-57, http://tinyurl.com/o4h4eod.
Describes the threat posed by glyphosate-resistant weeds to agriculture.
S5 Reuters: http://tinyurl.com/3b5zuss.
Describes the threat posed by glyphosate-resistant weeds to agriculture
S6 Price, A.J. et al. (2011). Glyphosate-resistant Palmer
amaranth: A threat to conservation tillage. Journal of Soil and Water
Conservation, 66, 265-75 Describes the threat posed by
glyphosate-resistant weeds to agriculture
S7 Glyphosate China Monthly Report, 4, 01 (20 January
2013). http://tinyurl.com/os8fvxq.
Describes the commercial importance of glyphosate.