UOA05-14: Prolysis Ltd: novel methods for antibiotic discovery
Submitting Institution
University of OxfordUnit of Assessment
Biological SciencesSummary Impact Type
TechnologicalResearch Subject Area(s)
Biological Sciences: Biochemistry and Cell Biology
Technology: Medical Biotechnology
Medical and Health Sciences: Medical Microbiology
Summary of the impact
From 1993 to 2005, Professor Errington and his colleagues at the
University of Oxford addressed
the increasingly serious global emergency of treating antibiotic-resistant
bacteria. Their research
led to the establishment in 1998 of the university spin-out company
Prolysis Ltd and the discovery
and development of two innovative series of antibiotics. The success of
Prolysis Ltd was confirmed
in 2009 when it was acquired by Biota Europe for £6.4 million, and gained
an additional investment
of £14.9 million. The subsequently formed Biota Pharmaceuticals Inc.
continues to support the
development of innovative broad-spectrum antibiotics essential to combat
antibiotic-resistant
bacteria.
Underpinning research
Antibiotic-resistant bacteria represent an increasing worldwide threat,
and new antibiotics are
urgently required to meet this emergency. An important area of innovative
antibiotic development
lies in the investigation of bacterial cell division. Methods of targeting
FtsZ (one of a group of
proteins known to be absent from humans, yet highly conserved throughout
the bacterial kingdom)
by using cell division inhibitors (CDIs), represents an extremely valuable
approach in developing a
new generation of effective broad-spectrum antibiotics.
From 1993 to 2005, Professor Errington and his group at the University of
Oxford performed
research into several key aspects of bacterial cell function, particularly
RNA synthesis,
chromosome replication and segregation, and cell division. They also
pioneered the application of
digital fluorescence imaging of protein and DNA in bacteria. One crucial
finding was the
identification of the SpoIIIE protein (a homologue of FtsZ) as a major
player in homeostatic
mechanisms designed to maintain chromosome integrity in bacteria1,2.
The dependence of
chromosome segregation on SpoIIIE also provided a highly sensitive and
specific assay to identify
inhibitors of SpoIIIE function or, indeed, inhibitors of other chromosome
segregation factors3.
Another pivotal result revealed that during the early stages of spore
formation in Bacillus subtilis,
key changes in gene expression were required for the cell division
machinery to function. These
gene expression changes were brought about by activity of the
transcription factor sigma F, which
is highly conserved in the bacterial sub-kingdom. This information
provided a novel means of
identifying CDIs, by screening for inhibitors of sigma F synthesis4.
In 1998, patents protecting Errington's research, together with £2.5
million funding from Oxford
Molecular (a company selling pharmaceutical software), were used to
establish Prolysis Ltd
(originally Microgenics Ltd) as a University spin-out company. From 2000
to 2008, research at
Prolysis Ltd was further supported by funding totalling more than £12
million from a variety of
sources, including equity investment led by the East Hill Management
Company of Boston, USA
(£3.25 million), Evotec OAI AG, the Wellcome Trust Seeding Drug Discovery
programme and a
LINK grant in Applied Genomics from the Biotechnology and Biological
Sciences Research
Council, the Medical Research Council, and the former Department of Trade
and Industry5. In
2002, Prolysis Ltd was able to gain access to world-class chemical and
drug discovery services
through its collaboration with Evotec OAI AG. The early stage drug
development carried out by
Prolysis Ltd resulted in novel cell-based screening methodology for
identifying antibacterial agents
and represented a major advance that was essential for the rapid
identification of bacteria-specific
CDIs6. Prolysis Ltd expanded rapidly from 7 full-time employees
in 2000 to a research team of up
to 50 international scientists in 2009. This expansion enabled Prolysis
Ltd to continue its
successful primary research programme to investigate more potent CDIs, and
in addition to
develop a second, highly innovative series of antibiotics that inhibit DNA
supercoiling enzymes,
specifically gyrases, that are essential for chromosome segregation.
References to the research
1. Wu LJ, Errington J. (1994) Bacillus subtilis SpoIIIE protein
required for DNA segregation during
asymmetric cell division. Science 264: 572-575. doi:
10.1126/science.8160014 Paper
identifying the SpoIIIE protein as a crucial effector of chromosome
segregation during
sporulation in Bacillus subtilis.
2. Sharpe ME, Errington J. (1995) Postseptational chromosome partitioning
in bacteria. Proc Natl
Acad Sci USA 92: 8630-8634. doi: 10.1073/pnas.92.19.8630 Paper
demonstrating a general
role for SpoIIIE protein in bacterial chromosome segregation.
3. Sharpe ME, Errington J. (1996) The Bacillus subtilis soj-spo0J
locus is required for a
centromere-like function involved in prespore chromosome partitioning. Mol
Microbiol. 21: 501-509.
doi: 10.1111/j.1365-2958.1996.tb02559.x Paper identifying the Spo0J
protein as a
novel chromosome segregation factor.
4. Feucht A, Daniel RA, Errington J. (1999) Characterisation of a
morphological checkpoint
coupling cell-specific transcription to septation in Bacillus subtilis.
Mol Microbiol. 33: 1015-1026.
doi: 10.1046/j.1365-2958.1999.01543.x Key paper demonstrating the
dependence of
sigma F activation on functioning of the cell division machinery.
6. Stokes NR, Sievers J, Barker S, Bennett JM, Brown DR, Collins I,
Errington VM, Foulger D,
Hall M, Halsey R, Johnson H, Rose V, Thomaides HB, Haydon DJ, Czaplewski
LG, Errington
J. (2005) Novel inhibitors of bacterial cytokinesis identified by a
cell-based antibiotic screening
assay. J Biol Chem. 280: 39709-39715. doi: 10.1074/jbc.M506741200 Paper
with mainly
Prolysis Ltd personnel describing the application of the cell division
inhibitor assay and
its use in identifying novel inhibitors of the cell division protein
FtsZ.
Funding for research: Between 1993 and 2006, Professor Errington's
research in Oxford was
funded by £2.3M in grants from the BBSRC, EU and Human Frontiers Science
Programme.
Details of the impact
The emergence of antibiotic-resistant bacteria represents a constant
threat to world health. A
headline in the Independent last year stated "Antibiotics crisis
will mean routine infections are
lethal" and Margaret Chan, head of the World Health Organization, warned
of a global crisis in
antibiotics7. This problem is particularly relevant for people
living in close communities or who have
health-associated problems, for example HIV sufferers. Examples of
antibiotic-resistant bacteria
include a multidrug-resistant tuberculosis that has been responsible for
at least 150,000 deaths7,
and methicillin-resistant or multidrug-resistant Staphylococcus aureus
(MRSA) that has shown
resistance to vancomycin8, a compound considered to be the
antibiotic of last resort. Each year in
the USA alone, MRSA infections are predicted to cost more than $3.2-$4.2
billion8. The necessity
to develop more effective antibiotics is therefore of paramount
importance. Professor Errington's
research, identifying and targeting cellular processes essential for
bacterial growth, represents a
timely approach to a rising emergency.
Clinical Value
The expertise generated within the University of Oxford and Prolysis Ltd
is at the vanguard of the
development of new, effective antibiotics. Using novel methodology,
Professor Errington and
colleagues identified novel compounds that were effective at targeting and
killing a wide range of
bacteria, including MRSA9, 10. These new classes of
broad-spectrum antibacterials, by their very
action of hitting pivotal cell division mechanisms, circumvent future
problems arising from antibiotic
resistance and thus represent real solutions to the emerging problem of
multidrug-resistant
bacteria. The achievements of Prolysis Ltd were reflected in 2009 when the
company was acquired
by Biota Europe11. This step facilitated further preclinical
development of the key research
programmes of Prolysis Ltd12 and accelerated their entry into
the clinic, providing new hope for the
effective treatment of antibiotic-resistant pathogens.
Commercialisation
The importance and commercial attractiveness of the research and
technology generated in
Oxford was recognised with Errington/Prolysis Ltd as runner-up in the
BBSRC Innovator of the
Year Competition in 200913, and with the acquisition of
Prolysis Ltd for £6.4M (A$10.8M) by the
Australian ASX-listed biotechnology company Biota Holdings Ltd11,
a company based in Melbourne
and Oxford (Biota Europe Ltd). Biota Holdings Ltd announced plans to
invest £14.9M (A$25M)
between 2009 and 2012 to develop the key CDI and DNA gyrase (GYR)
programmes initiated in
Oxford11. The CDI programme targeted staphylococcal infections,
including MRSA, while the GYR
programme, focused on DNA supercoiling inhibitors, to target the bacterial
enzymes DNA gyrase
and DNA topoisomerase, both of which are essential for bacterial survival.
The acquisition
therefore enabled the early stage development of antibacterial agents
performed by Prolysis Ltd, to
undergo further preclinical development and for the compounds to enter
clinical trials. For example,
an important asset of Prolysis Ltd was its Clostridium difficile
programme; Biota Holdings Ltd.
obtained £1.9M ($2.9M) from the National Institute of Health (ROI
A1094456) for the continued
preclinical development of a new candidate for treating virulent strains
of C. difficile14. Since
hospital costs associated with this infection are estimated at more than
£2.1 billion ($3.2 billion) per
annum in the USA, with treatment usually consisting of vancomycin or
metronidazole14, a
successful antibiotic would have enormous benefit to the patient and
reduce the cost of health
care. Another important outcome of the acquisition by Biota Holdings Ltd
was the continued full-time
employment of all of the Prolysis Ltd staff and the maintenance of
research activities in
Oxford. Prolysis Ltd also retained the rights to 15% of shares in all
milestones achieved, and in
royalties earned on commercialisation. Professor Errington was elected to
the Board of Biota
Holdings Ltd on 1 February 2010.
Biota Holdings Ltd subsequently merged with Nabi Biopharmaceuticals in
November 2012 to
become the NASDAQ-listed group Biota Pharmaceuticals Inc. (worth £165.4M
or $258M) with
headquarters in the USA15 and operations based in Melbourne and
Oxford. Examples of Biota's
commercialised products include Relenza and Inavir (antivirals for
influenza). Biota
Pharmaceuticals Inc. are continuing their broad-spectrum antibiotic
programmes15. Indeed the
GYR programme is considered to be one of the key components of Biota's
strategy. Professor
Errington continues to act as a Non-Executive Director at Biota
Pharmaceuticals Inc.
Effective broad-spectrum antibacterial agents that target even
antibiotic-resistant strains have
resulted from underpinning research originating at the University of
Oxford. The estimated sales
potential of these products is £200m — £1 billion per year.
Sources to corroborate the impact
7. `Alarming' rise in antibiotic resistance. NHS Choices. 2012. Available
from:
http://www.nhs.uk/news/2012/11November/Pages/Alarming-rise-in-antibiotic-resistance.aspx
NHS Choices article on the rise in antibiotic resistance.
8. New research estimates MRSA infections cost U.S. hospitals $3.2
billion to $4.2 billion
annually. Infection Control Today. 2005. Available from:
http://www.infectioncontroltoday.com/news/2005/05/new-research-estimates-mrsa-infections-cost-u-s-h.aspx
Details of cost of MRSA in USA healthcare.
9. Haydon DJ, Stokes NR, Ure R, Galbraith G, Bennett JM, Brown DR, Baker
PJ, Barynin VV,
Rice DW, Sedelnikova SE, Heal JR, Sheridan JM, Aiwale ST, Chauhan PK,
Srivastava A,
Taneja A, Collins I, Errington J, Czaplewski LG. (2008) An inhibitor of
FtsZ with potent and
selective anti-staphylococcal activity. Science 321: 1673-1675. doi:
10.1126/science.1159961
Paper with mainly Prolysis Ltd personnel describing pharmaceutical
efficacy of a CDI.
10. Czaplewski LG, Collins I, Boyd EA, Brown D, East SP, Gardiner M,
Fletcher R, Haydon DJ,
Henstock V, Ingram P, Jones C, Noula C, Kennison L, Rockley C, Rose V,
Thomaides-Brears
HB, Ure R, Whittaker M, Stokes NR. (2009) Antibacterial alkoxybenzamide
inhibitors of the
essential bacterial cell division protein FtsZ. Bioorg Med Chem Lett 19:
524-527. doi:
10.1016/j.bmcl.2008.11.021 Paper by Prolysis Ltd describing the
development of potent
anti-staphylococcal inhibitors.
11. Biota announcement of acquisition of Prolysis assets, Nov 2009 and
includes details of the
deal, details of the Prolysis antibiotic programmes and their foundation
in Prof Errington's basic
science. http://www.biotapharma.com/uploaded/154/1021586_49biotaacquirestheantibac.pdf
12. Haydon DJ, Bennett JM, Brown D, Collins I, Galbraith G, Lancett P,
MacDonald R, Stokes NR,
Chauhan PK, Sutariya JK, Nayal N, Srivastava A, Beanland J, Hall R,
Henstock V, Noula C,
Rockley C, Czaplewski L. (2010) Creating an antibacterial with in vivo
efficacy: synthesis and
characterization of potent inhibitors of the bacterial cell division
protein FtsZ with improved
pharmaceutical properties. J Med Chem 53: 3927-3936. doi:
10.1021/jm9016366 Paper from
Biota Europe Ltd describing the further validation of FtsZ as an
antibacterial target and
suitable for optimisation into new anti-staphylococcal therapy.
13. BBSRC Press Release
http://www.bbsrc.ac.uk/news/archive/2009/090325-pr-innovator-of-the-year.aspx
Errington
and Prolysis runners up as Inaugural BBSRC Innovators of the Year
2009.
14. Biota obtains US$2.9m NIH grant for the development of novel
antibacterial. Business Wire.
2011. Available from: http://www.businesswire.com/news/home/20110610005120/en/Biota-Obtains-US2.9m-NIH-Grant-Development-Antibacterial
Website mentioning that in 2011
Biota Holdings Ltd was awarded an NIH grant for $2.9 million for the
development of
antibacterial agent for treating C. difficile.
15. Biota and Nabi merge to form Biota Pharmaceuticals. CenterWatch News
Online. 2012.
Available from: http://www.centerwatch.com/news-online/article/3247/biota-and-nabi-merge-to-form-biota-pharmaceuticals
Website describing the merger of Biota Holdings Ltd with Nabi
Biopharmaceuticals and
the continuation of the broad-spectrum antibiotic-targeting gyrase
(GYR) programme.