Submitting Institution
University of GlasgowUnit of Assessment
Mathematical SciencesSummary Impact Type
CulturalResearch Subject Area(s)
Mathematical Sciences: Statistics
Biological Sciences: Genetics
Summary of the impact
Research in the School of Mathematics & Statistics in the University
of Glasgow has been influential in answering a long-standing question:
where do we come from? The fleshing-out of the 'out of Africa' theory has
been the focus of two documentary series, The Incredible Human Journey
and Meet the Izzards, and has generated income for DNA testing
companies in the UK and US by enabling them to offer `deep DNA' tests
revealing one's roots from far back in history. The Incredible Human
Journey aired on BBC 2 in 2009, reaching 10.2 million viewers
altogether, has been watched 100,000 times on YouTube and was broadcast in
shorter format in Australia and Canada before being released as a DVD. Meet
the Izzards was broadcast on BBC 1 in 2013 to over 3 million people.
Underpinning research
The research provided the strongest genetic evidence to date of the route
by which modern humans migrated out of east Africa some 60,000-80,000
years ago. This landmark study carried out by Dr Vincent Macaulay (Reader
in Statistics, University of Glasgow, 2003-present) and an international
team from 2003-2005 brought into radically sharper focus the `out of
Africa' theory of human dispersal. Prior to this it was generally believed
that there was a series of dispersals from different areas of Africa,
including a northerly wave which was ultimately to populate Europe.
Macaulay et al.'s findings demonstrated that only one relatively small
group of human ancestors travelled from Africa eventually to spread over
the rest of the world; that this group travelled faster and further than
previously believed; and that all humans outside Africa are ultimately
descended from the same group of travellers.
Mitochondrial DNA (mtDNA) is passed down the maternal line, and is
important to genetic archaeology because it is inherited intact (in
contrast to most of our DNA) and has plenty of variation, generated when
mutations occur between mother and child, which makes it possible to
reconstruct the ancestry of the sequences in exquisite detail. If the
mutation rate of mtDNA can be established, researchers can exploit that
rate to convert genetic variation into time estimates to assign mutations
to particular eras and places. Macaulay's work focussed on developing
statistical models to accomplish these two tasks from the complete
mitochondrial DNA sequence data gathered from diverse living humans, in
the context of international teams of human geneticists. He used
techniques from graph theory (median networks) and likelihood approaches
to help to reconstruct the `family tree' of mtDNA [1]. His research then
addressed spatial questions — what physical locations are associated with
particular ancestors in this tree [2], before he turned to the temporal
aspects, where it was vital better to model the clock which describes how
rapidly particular genetic material changes by mutation. A technique for
doing this was proposed [3] for the case where DNA is experiencing natural
selection, so that in effect the clock appears to slow down as one moves
into the past. This allowed a tool [3] to be developed to extract more
temporal information from mtDNA sequences than was hitherto possible, so
that the variation in mtDNA is much more securely anchored in time, a
vital pre-requisite for robust genealogical interpretation at deep time
depths.
Finally, and most challengingly, between 2003 and 2010 Macaulay modelled
the processes that generated the inferred spatio-temporal signal
in the tree. For example, these might involve migration, as in the
high-profile study [2] which provides the strongest genetic evidence to
date of the route by which modern humans migrated out of east Africa
60,000-80,000 years ago; by detecting temporal patterning in the
distribution of inferred movements of ancestors in the tree (`founder
analysis', the statistical properties of which have been explored [4] in
the context of the structure coalescent process); or admixture, by
dissecting the contribution of different regions of Africa to the
Americas, as a result of the slave trade, by Bayesian modelling [5].
Macaulay has developed these approaches with three local research
students in Statistics, Dr Noel Thomson (supported by a scholarship from
the Carnegie Trust), Dr Maarya Sharif (supported by a studentship from
EPSRC) and Dr Colette Mair (supported by a University of Glasgow
scholarship). The University of Glasgow researchers have been solely
responsible for developing the new statistical techniques and have shared
the job of applying them, in various collaborative teams with wet-lab
colleagues in other institutions in the UK and the rest of Europe (who
focus on the sample collection, the DNA sequencing, and bioinformatics
issues). The techniques have been most comprehensively applied to
understanding genetic variation in human mitochondrial DNA, one of the
main genetic loci that have been marketed by the genetic genealogical
industry in the last 10 years. The specific University of Glasgow
contribution to the impact was the statistical modelling that allowed
inferences about time, place and process to be made from contemporary DNA
sequences, inferences that have generated the impact in the genetic
genealogy industry.
References to the research
1. Torroni, A., Achilli, A., Macaulay, V., Richards, M. and Bandelt,
H.-J. (2006). Harvesting the fruit of the human mtDNA tree. Trends in
Genetics, 22, 339-345. (doi:10.1016/j.tig.2006.04.001)
*
2. Macaulay, V., Hill, C., Achilli, A., Rengo, C., Clarke, D., Meehan,
W., Blackburn, J., Semino, O., Scozzari, R., Cruciani, F., Taha, A.,
Shaari, N. K., Raja, J. M., Ismail, P., Zainuddin, Z., Goodwin, W.,
Bulbeck, D., Bandelt, H.-J., Oppenheimer, S., Torroni, A. and Richards, M.
(2005). Single, rapid coastal settlement of Asia revealed by analysis of
complete mitochondrial genomes. Science, 308, 1034-1036 and 309,
1995-1996. (doi:10.1126/science.1109792)
*
3. Soares, P., Ermini, L., Thomson, N., Mormina, M., Rito, T., Röhl, A.,
Salas, A., Oppenheimer, S., Macaulay, V. and Richards, M. B. (2009).
Correcting for purifying selection: an improved human mitochondrial
molecular clock. American Journal of Human Genetics, 84, 740- 759.
(doi:10.1016/j.ajhg.2009.05.001)
*
4. Thomson, Noel (2010) Bayesian mixture modelling of migration by
founder analysis. PhD thesis, University of Glasgow. (http://theses.gla.ac.uk/1468/)
5. Salas, A., Carracedo, Á., Richards, M., and Macaulay, V. (2005).
Charting the ancestry of African-Americans. American Journal of Human
Genetics, 77, 676-680. http://dx.doi.org/10.1086/491675
* best indicators of research quality
Details of the impact
The southern-route `out of Africa' theory of human dispersal developed by
University of Glasgow research has sparked huge ongoing public interest
since its publication in 2005. The idea has been discussed in the TV
series and popular science book The Incredible Human Journey by
Alice Roberts in 2009/10. University of Glasgow research has also led to
the creation of a revised timeline (based on a time-dependent molecular
clock) for linking DNA changes with locations and times, which has been
adopted by companies such as BritainsDNA,
which offer DNA tests for people seeking information about their recent
and deep ancestry. The 2013 TV programme Meet the Izzards is
another high-profile show which used the Glasgow research in part to trace
Eddie Izzard's ancestry back to the evolution of modern humans in east
Africa.
The Incredible Human Journey was published by Bloomsbury in 2010.
Roberts describes the `out of Africa' theory in an accessible manner for a
lay audience, and quotes the research papers by Macaulay et al. for those
looking for more details. One reviewer on Amazon says, `I am gripped by the
central idea that only about 200 families originally emerged out of Africa
and between them populated the whole world', one of the statistical
inferences made by Macaulay.
The TV series was broadcast on BBC 2 from May-June 2009, as a 5-part
series following the routes of the families who populated the world. The
first part is titled `Out of Africa' and gives a full picture of the
earlier theories prior to the Macaulay et al paper in 2005, but each of
the episodes recounts the general theory for viewers who had not seen the
first one. The later episodes follow Macaulay et al.'s theory of the
dispersal of humans across the planet. Over 10.2 million viewers watched
the series when it was aired on the BBC, with Part 1, `Out of Africa',
being shown on 10 May and achieving an audience of 2.22m. Part 2, `Asia',
reached 2.34m; Part 3, `Europe', was watched by 1.66m; Part 4, `Australia'
attracted 2.11m viewers; and Part 5, `The Americas', reached an audience
of 1.86m. The series is currently available to view on YouTube and the
first episode has been viewed 101,562 times since it was added to the site
in August 2011. It has also been widely reviewed as a series and book,
with The
Observer noting that it provides `an easily digestible
introduction to a complex but fascinating story.'
Meet the Izzards is a 2-part documentary, which aired on BBC 1 at
a prime-time slot of 9pm on 20 and 21 February 2013, and was available on
iPlayer. It was broadcast to an audience of 2.62
million (figures for Part 1 only). In the documentary, Izzard
explains the `out of Africa' concept to the audience: `we all come out of
Africa, and we come from the same people. So we were a small group of
10,000 people and then we've turned into seven billion people on the
planet.' The programme received widespread press coverage. The consultant
scientist acknowledges the programme's debt to Macaulay's work, stating
that his mtDNA genealogy discoveries; `...define a scientific
framework for a number of documentaries, including Meet the Izzards but
also other series which seek to educate the public and disseminate human
population genetics to the lay public'.
The consultant to the BBC programme is also Chief Scientific Officer
(CSO) of BritainsDNA, one of a number of companies which have sprung up
around the combination of DNA analysis and the public appetite for
genealogy. BritainsDNA, established 2011 as ScotlandsDNA, draws upon the
`out of Africa' theory to analyse DNA samples from the public. This has
tapped into the huge public interest in tracing their ancestors, allowing
members of the public to trace their genetic lineage through DNA testing.
BritainsDNA draws upon Macaulay et al.'s work to allocate dates and
locations in history to the mtDNA samples taken from the public. The CSO
for the company states:
Dr Macaulay's work underpins a significant part of the genetic
ancestry testing business. Specifically his contributions to the
understanding of the mtDNA genealogy — the topology or shape of the
tree, the timing of many of the splits in the tree and the distribution
of the groups across geography are the bread and butter of the
interpretation of mtDNA lineages. This impact is felt not only at
BritainsDNA but across all companies offering genetic ancestry testing
involving mtDNA — a multi-million dollar global industry.
Sources to corroborate the impact
- Testimonial from Consultant Scientist on `Meet the Izzards' and Chief
Scientific Officer for BritainsDNA (available from HEI) (confirming
importance of research to programme and to genetic ancestry testing
industry, and confirming viewing figures for Meet the Izzards)
- The Guardian, 21 February 2013 (link)
(re Meet the Izzards viewing figures)
- BBC 2 Programmes, The Incredible Human Journey, Out of Africa (link)