Synthetic Biology and Citizen Science
Submitting Institution
Manchester Metropolitan UniversityUnit of Assessment
Computer Science and InformaticsSummary Impact Type
SocietalResearch Subject Area(s)
Mathematical Sciences: Applied Mathematics
Information and Computing Sciences: Artificial Intelligence and Image Processing, Computation Theory and Mathematics
Summary of the impact
    This case study is based on research at the interface of computer science
      and biology, undertaken at MMU. Subsequent inter-disciplinary work was
      partly supported by the EPSRC Bridging the Gaps: NanoInfoBio project, and
      led to the creation of a new "citizen science" organization, which is now
      one of the leading groups of its type in the world. The specific impacts
      are (1) generation of revenue for a new business operation created as a
      result of the project, (2) the stimulation of and influence on policy
      debate, and (3) the stimulation of public interest and engagement in
      science and engineering.
    Underpinning research
    Members of the Novel Computation Group (School of Computing, Mathematics
      and Digital Technology, MMU) study alternatives to "traditional" forms of
      computing, including new theoretical models and non-silicon physical
      substrates [1]. This often requires an inherently
      inter-disciplinary approach. One well-established research theme is synthetic
        biology: the application of engineering principles to the (re)design
      of living biological systems. The Group leader, Prof. Amos, is a
      world-leading researcher in the field of molecular computing; his 1997
      Ph.D. thesis was the first in the field of DNA computation. In 2006, Amos
      published a book [2] describing this emerging field of biological
      computation; a review in Nature (March 15 2007, p. 263-264) stated
      that "This is an enjoyable book... I recommend it to anyone interested in
      computation writ large who is not afraid to cross disciplinary boundaries
      that once seem impassable." Amos contributed to a paper published around
      the same time, which called for closer links to be established between
      computer science, engineering and the life sciences in order to fulfill
      the true potential of bio-inspired computing [3]. To help further
      develop such links, two projects were funded at MMU from 2009 onwards. The
      Bridging the Gaps: NanoInfoBio (NIB) project at MMU was funded by the
      EPSRC in 2009 (EP/H000291/1, £289,095), and ran for 30 months [4].
      The core aim of the project was to bring together researchers from
      different disciplines to focus on problems at the intersection of
      nanotechnology, informatics and biology. In total, the project supported
      21 different projects, with funding ranging from small student bursaries
      to £25K grants. BACTOCOM was a European Commission Collaborative Project
      (248919, €1,949,997, 2010-2013) to investigate the creation of an
      "evolvable" synthetic biology platform [1]. Amos was the PI on
      both grants, and, together, they led to a significant increase in the
      amount of work at the intersection of biology and computer science, both
      at MMU and beyond.
    The original NIB proposal stated "An important aspect of the programme's
      activities will be public engagement", and public outreach was assigned a
      specific work package task within BACTOCOM. One of the public engagement
      events we organized was a panel discussion on synthetic biology, which was
      attended by Asa Calow, a Director of the Manchester Digital Laboratory
      (MadLab). MadLab is an independent open learning and experimentation
      environment, and Calow suggested that we collaborate to develop a "DIY
      bio" laboratory space in Manchester. This meeting was a direct result
      of the public engagement event, as there had been no prior contact. The
      resulting proposal was funded by the Wellcome Trust's People Awards scheme
      (WT095313MA, £29,705), creating the DIYbio Manchester (DIYBIOMCR) project
      [5]. "Do-it-yourself" biology (DIYbio) is a growing international
      movement, the aim of which is to democratise and widen access to
      biotechnology (which, of course, is of direct relevance to synthetic
      biology). The fundamental philosophy of DIYbio is to bring together
      interested "amateurs' with professional scientists, with the aim of
      stimulating discussion, widening public understanding, and ensuring the
      safe and ethical management of amateur experiments. With this project, we
      aimed to engage the public with underpinning research in the unit, as well
      as with the full range of new ideas and societal issues at the bio/info
      interface. When it was set up, DIYBIOMCR was only the second such group in
      the UK, and one of only a handful worldwide. The creation of this
      organization (and its resulting impact) can therefore be traced directly
      back (and attributed) to the NIB project, which, in turn, arose as a
      result of research in the unit taking place at the intersection of
      computer science and biology.
    Key Staff:
    Prof. Martyn Amos, Chair of Novel Computation; appointed SL, 2006; Reader
      2010; Professor 2012.
    References to the research
    
[1] Goñi-Moreno, A., Amos, M. & de la Cruz, F. (2013)
      Multicellular computing using conjugation for wiring. PLOS ONE 8(6),
      e65986. (Recent exemplar output of the BACTOCOM project.) doi: 10.1371/journal.pone.0065986
      (1 Google Scholar citation).
     
[3] Timmis, J., Amos, M., Banzhaf, W. & Tyrrell, A. (2006)
      "Going back to our roots": Second generation biocomputing. International
        Journal of Unconventional Computing 2:4, p.p. 349-378. (20
        citations)
     
[4] Jacobs, N. & Amos, M. (2012) NanoInfoBio: A case-study in
      interdisciplinary research. In Kettunen, J., Hyrkkanen, U. & Lehto, A.
      (Eds.) Applied Research and Professional Education, p.p. 289-309.
      Turku University of Applied Sciences. Available at http://arxiv.org/abs/1211.5508.
      (An earlier version of this paper, made available in 2010 as an Arxiv
      pre-print, has 5 citations).
     
[5] Amos, M., Calow, A., Jacobs, N., Jung, H.Y., Linton, T. &
      Verran, J. (2012) Manchester DIYbio. In Bowater, L. & Yeoman, K., Science
          Communication: A Practical Guide for Scientists, p.p. 250-251,
      Wiley-Blackwell.
     
Grants
    
      
        
          | Funder | Project | Value to MMU | Dates | PI | 
        
          | EPSRC | Bridging the Gaps: NanoInfoBio
 | £289,095, plus additional £50K from EPSRC. Total:
            £339,095 | Sept. 2009-Nov. 2011 | Martyn Amos | 
        
          | European Commission | BACTOCOM: Bacterial Computing with Engineering
            Populations
 | €328,426 (Grant total €1,949,997). | Feb. 2010-Jul. 2013 | Martyn Amos | 
        
          | Wellcome Trust | DIYbio Manchester | £29,705 | Mar. 2011-May 2012 | Martyn Amos | 
      
    
    Details of the impact
    NIB directly led to the creation of an entirely new organisation.
      DIYBIO Manchester (DIYBIOMCR) is now an established independent entity,
      the UK's largest "do it yourself" biology group, and is an active
      participant in the global DIYbio movement. For a full list of relevant
      DIYBIOMCR activities, please see [A,B]. Relevant projects included
      the Manchester Microbe Map (a bacterial "atlas" of bus stops in
      Manchester), and the construction of "homebrew" DNA replication equipment.
      As a result of the project, the turnover of MadLab (the parent
      organization) has grown significantly, and, since 2011, an average
      of 80% of MadLab's income has been due to DIYBIOMCR. The MadLab finance
      manager, provided the following figures on 14/11/13:
    
      
        
          | Period | Total Income | DIYBIO-attributable | Unrelated to DIYBIO | DIYBIO-attributable % | 
        
          | 2013-14 (pred.) | £330,000 | £228,000 | £102,000 | 69 | 
        
          | 2012-13 | £160,606 | £140,919 | £19,687 | 88 | 
        
          | 2011-12 | £85,185 | £72,011 | £13,174 | 85 | 
      
    
    These show income that is directly attributable to the
      DIYBIOMCR project, including income from the Wellcome Trust,
      consultancies, residencies, paid workshops and other collaborative
      projects that arose as a result of the work done on DIYBIOMCR.
    A deposition from MadLab Director states that "DIYBIOMCR has brought much
      positive attention to MadLab, and exposed the organization to a wide range
      of new audiences. We have become much more outward-facing, as opposed to
      focusing on community groups and in-house training. At the time, the
      Wellcome Trust funding was MadLab's largest single block of external
      money, and represented its most significant external relationship with
      another organization. This seed-corn money, in turn, gave access to more
      funding, and allowed MadLab to present itself in a different light to
      external bodies. To put it bluntly, the Wellcome Trust "seal of approval"
      gave MadLab a significant "cachet", on which we have since built. MadLab
      is now in the process of converting into a Community Interest Company, and
      we have separately raised £160K of the £250K we need to refurbish our
      space. Much of the money raised has come from local and national sources
      that have been developed and nurtured as a direct result of DIYBIOMCR." [C]
    In recent years the US Federal Bureau of Investigation (FBI) has
      developed a DIY bio program that aims to share information and make
      connections between amateur scientists and local law enforcement officers.
      The objective is to address any concerns (on either side of the regulatory
      "fence"), and to provide a framework for ongoing discussions. The Bureau's
      local Weapons of Mass Destruction (WMD) coordinators are the focal point
      of such conversations, and ensure that local authorities (e.g., fire and
      police service, environmental health) are informed of the nature and
      location of cooperating DIY biology laboratories. The FBI also works
      closely with the Department of State on biosecurity, and the Department of
      Health and Human services on biosafety.
    As a result of our high-profile activities, the FBI invited DIYBIOMCR
      participants Asa Calow and Rachel Turner to attend a workshop held in San
      Francisco on 12-14/6/2012; Calow and Turner were the only UK-based
      participants in attendance, and they were specifically invited as a direct
      consequence of the outcomes of DIYBIOMCR. The purpose of the workshop was
      to "educate the FBI about biology" (in the context of the growing DIY
      biology movement), and to "foster the positive relationship among FBI,
      DIYbio, amateur biology and local stakeholder communities to ensure safe
      conduct in science." [D] The FBI explicitly stated that "we want
      to model this for the international community..." (that is, they
      want to help to develop policy and practice, both within
      the US and beyond). Their explicit aim is to help to avoid extra
      regulation of DIYbio scientists "that hinders their abilities to push
      scientific progress. Ultimately, it will be up to the communities
      themselves how they wish to operate, and the FBI will continue to work
      with them to further their efforts." [D].
    A subsequent email (27/7/2012) to Calow and Turner from an FBI
      supervisory special agent with the FBI Weapons of Mass Destruction (WMD)
      Directorate in Washington DC stated that "I wanted to thank you again for
      agreeing to come and present at the event ... Your perspective on media
      issues was delivered so well that I believe that a great impact was left
      [on] the attendees ... It really left a great impression on me that some
      direction and reinforcement is being given to this community in
      proactively engaging the media, to their ultimate benefit." [D]
    A later message (10/6/2013) to Prof. Amos from the FBI Special Agent
      (about the DIYBIOMCR contribution) stated that "their insight, engagement
      within their community and energy makes them, in my eyes, a leader in
      being a proactive member of the amateur biology community... These steps
      take a long time to climb, but it seems as if they have been very
      successful in developing a working model that serves their community.
      Additionally, Rachel's input regarding interactions with the media have
      kept this issue in high standing for our future events with this
      community." [D]
    The total immediate (in-person) audience reached was around 700 for
      DIYBIOMCR [B]. Results were disseminated widely, and though
      high-profile channels such as pieces (both 28/3/2012) on the main BBC
      Ten-o-clock News (estimated viewing figure: 4.75M) and Radio 4's Today
      programme (average weekly audience of around 7M) [E,F].
    Sources to corroborate the impact 
    All public sources are linked from http://www.scmdt.mmu.ac.uk/cir/REF
    [A] DIYBIOMCR activities (during and after the grant):
    Full list of projects/activities at http://www.scmdt.mmu.ac.uk/cir/REF
    Manchester Microbe Map online at http://www.danhett.com/projects/microbe/.
    Nature SpotOn blog article on DIYBIOMCR at http://www.nature.com/spoton/2012/12/spoton-nyc-diy-science-manchester-digital-laboratory-madlab/.
    Wellcome Trust Public Engagement Adviser and DIYBIOMCR contact (details
      uploaded into the REF submission system)
    [B] DIYBIOMCR evaluation:
    Final Evaluation Report, Sally Fort. Available at
      https://dl.dropboxusercontent.com/u/3105497/DIYBioMcrEvaluationReport.pdf.
    [C] Impact of DIYbio on MadLab organization:
    Deposition from Director, MadLab (full details uploaded into the
      submission system).
    [D] FBI/DIYBIOMCR consultation:
    Information on FBI workshop available from link at top. Emails from FBI
      Special Agent (full details uploaded into the REF submission system)
      (27/6/12 and 10/6/13), plus Guardian Northerner blog article,
      18/6/12 at http://bit.ly/189MVcQ
    [E] Media coverage (TV):
    28/3/2012: DIYBIOMCR featured on BBC Ten O'Clock News; write-up
      available at BBC Online at http://www.bbc.co.uk/news/science-environment-17511710.
      Viewing figures for BBC1 from www.barb.co.uk
      for week ending April 1 2012.
    [F] Media coverage (radio):
    28/3/2012: DIYBIOMCR featured on BBC Radio 4 Today Programme.
      Recording available at http://news.bbc.co.uk/today/hi/today/newsid_9709000/9709494.stm.
      Today programme figures from http://www.guardian.co.uk/media/2012/feb/02/radio-4-today-audience-figures-boost.