Spatiotemporal Undersampling for Highly Accelerated MRI
Submitting Institution
King's College LondonUnit of Assessment
General EngineeringSummary Impact Type
TechnologicalResearch Subject Area(s)
Physical Sciences: Other Physical Sciences
Medical and Health Sciences: Cardiorespiratory Medicine and Haematology, Neurosciences
Summary of the impact
Imaging speed is of critical importance in most Magnetic Resonance (MR)
imaging applications. King's College London (KCL) researchers have
developed spatiotemporal undersamplings, or "k-t" methods, for
three-dimensional (3D) imaging and corresponding image reconstruction
methods that have increased the speed of imaging significantly, so that
particular scans are now 5-7 fold faster. This has directly impacted the
experience of the patient whose overall examination time has been reduced
from more than 1 hour to less than 30 minutes depending on the
application. The technology has been patented and has been implemented by
Philips Healthcare, one of the three major manufacturers of MR equipment.
A clinical solution platform for 3D MR cardiac perfusion and quantitative
flow imaging, based on the technology developed at KCL, has also been
launched by the Swiss company, GyroTools LLC.
Underpinning research
Research at the Division of Imaging Science & Biomedical Engineering,
KCL has been concerned with addressing a key limitation intrinsic to the
image formation process in Magnetic Resonance (MR) imaging and developing
a technology to overcome this restriction. As MR relies on a spectroscopic
encoding principle, higher resolution inherently prolongs scan time and
makes imaging of moving organs and transient processes at high resolution
impossible. While parallel imaging methods, as available on commercial MR
systems, can address this, they are limited by noise amplification for
scan acceleration beyond a factor of three to four, and necessarily
require dedicated multi-channel signal receivers.
In contrast, spatiotemporal undersampling, or "k-t" methods, exploit
information redundancy present in the data themselves to reduce the
density of sampling, and thus scan time, without requiring dedicated
receiver arrays. In essence, these methods encode the changes of moving
objects from one time instant to the next, rather than imaging the entire
object at every time instant. This means MR scans can be accelerated
dramatically. In addition to providing more time-saving and cost-efficient
scanning, dynamic 3D imaging applications that have hitherto been
prohibitively long for a breathhold of the patient have now become
clinically feasible. Such methods have been developed at KCL by Kozerke
(2002-2003 and 2008-present, Research Fellow and subsequently Professor)
together with Razavi (2000-present Lecturer and subsequently Professor).
A major application field of spatiotemporal MR undersampling methods is
in diagnosing cardiovascular disease, which remains the major cause of
mortality in the Western world, affecting 30% of the population. Ischemic
or coronary heart disease is the main contributor to cardiovascular
disorders and early diagnosis has been identified as a key strategy for
monitoring patients at risk. To assess the ischemic burden of the heart, a
non-invasive and cost-effective 3D imaging test is required that provides
adequate resolution and coverage.
Based on the fundamental principle of k-t undersampling for 2D imaging,
KCL researchers proposed a 3D approach for imaging cardiac motion. Here,
it was demonstrated that 4.3-fold scan acceleration can be achieved by
extending k-t undersampling to a 3D sampling domain including two spatial
and one temporal dimension. In this way, twenty imaging slices at a
resolution of 2x2x5 mm3 could be acquired in a single
breathhold (the timeframe required to carry out the exam), hence enabling
single-breathhold time-resolved volumetric imaging of the heart at high
resolution for the first time [1].
Among a wide range of possible applications of the technology researchers
at KCL have focused on developing dynamic contrast-enhanced cardiac
perfusion imaging as a diagnostic tool. In order to achieve scan
acceleration factors beyond a factor of four to five, they employed a
decomposition of the spatiotemporal data into temporal basis functions
weighted by temporally independent spatial weights. Thereby nominal k-t
undersampling factors of 10 have been achieved enabling 3D
contrast-enhanced cardiac perfusion imaging at unparalleled resolution.
KCL researchers were the first to present 3D whole-heart myocardial
perfusion imaging in patients and have successfully validated its
diagnostic performance against fractional flow reserve measurements, which
is regarded as the gold standard for invasive assessment of perfusion. In
53 patients referred for angiography, this technique was shown to
accurately detect functionally significant coronary artery disease (CAD).
Sensitivity, specificity, and diagnostic accuracy for the detection of
significant CAD were 91%, 90%, and 91%, on a patient basis, demonstrating
excellent diagnostic performance [2].
To enable further scan acceleration, KCL researchers have developed k-t
undersampling to employ compartment-specific temporal basis functions,
weighted by temporally independent spatial weights. In this work, they
demonstrated that significant improvements in reconstruction accuracy can
be achieved relative to the original k-t imaging formulations. It was
shown that prospective nominal undersampling of up to 16 can be realised.
As a clinical application, the acquisition of cine flow data in the aorta
was demonstrated permitting assessment of 2D velocity images and pulse
wave velocities at 100 frames per second in a single breathhold per slice
[3].
Extending the application range, sparsity transform k-t principal
component analysis has been proposed and demonstrated for flow
quantification of the carotid bifurcation. The rationale behind this
additional sparsity transform is the fact that blood vessels provide a
very sparse and hence compressible representation upon subtraction of the
image background. This subtraction is achieved by exploiting the fact that
images encoding blood velocities in different spatial directions can be
linearly combined such that static background cancels out. Deploying the
sparsity transform, velocity root-mean-square errors were found to
decrease by 52 ± 14%, 59 ± 11%, and 16 ± 32% in the common, external, and
internal carotid artery, respectively [4]. Moreover, by exploiting k-t
undersampling technology KCL researchers have been able to assess both
kinetic and turbulent kinetic energy using Bayesian analysis. Comparison
of peak turbulent kinetic energy measured in patients with aortic stenosis
revealed considerable differences relative to the values detected in
healthy subjects proving the potential of the method to provide a
comprehensive hemodynamic assessment in patients [5].
Both projects [4 & 5] were initiated and supervised by Kozerke while
at KCL. The implementations were, however, carried in close collaboration
with researchers at ETH Zurich, Switzerland to exploit experimental
equipment and resources available at ETH.
References to the research
1. Kozerke S, Tsao J, Razavi R, Boesiger P. Accelerating cardiac cine 3D
imaging using k-t BLAST. Magn Reson Med 2004;52(1):19-26. Doi:
10.1002/mrm.20145
2. Jogiya R, Kozerke S, Morton G, De Silva K, Redwood S, Perera D, Nagel
E, Plein S. Validation of dynamic 3-dimensional whole heart magnetic
resonance myocardial perfusion imaging against fractional flow reserve for
the detection of significant coronary artery disease. J Am Coll Cardiol
2012;60(8):756-65. Doi: 10.1016/j.jacc.2012.02.075
3. Giese D, Schaeffter T, Kozerke S. Highly undersampled phase-contrast
flow measurements using compartment-based k-t principal component
analysis. Magn Reson Med 2013;69(2):434-43. Doi: 10.1002/mrm.24273
4. Knobloch V, Boesiger P, Kozerke S. Sparsity transform k-t principal
component analysis for accelerating cine three-dimensional flow
measurements. Magn Reson Med 2013;70(1):53-63. Doi: 10.1002/mrm.24431
5. Binter C, Knobloch V, Manka R, Sigfridsson A, Kozerke S. Bayesian
multipoint velocity encoding for concurrent flow and turbulence mapping.
Magn Reson Med 2013;69(5):1337-45. Doi: 10.1002/mrm.24370.
Grants
2000-2006: PIs: Hawkes D, Marsden P From Medical Images and Signals to
Clinical Information Inter-disciplinary Research Consortium" EPSRC and
MRC, £1,859,379
2009-2011. PIs: Plein S, Kozerke S. Three-dimensional Whole Heart
Perfusion MR Imaging, British Heart Foundation, project grant. £195k
2011-2013. PI: Kozerke S. Accelerated Myocardial Perfusion, Metabolic and
Contractile Cardiovascular Magnetic Resonance Imaging. FP7 EU
Marie-Curie-Fellowship. €180k
2011-2014. PI: Kozerke S. Development of Highly Accelerated Magnetic
Resonance Methods for Quantitative Analysis of Perfusion, Metabolism and
Function in Cardiac Ischemia. Swiss National Science Fonds, project grant.
£465K (In Swiss Francs).
Details of the impact
King's College London's k-t method for 3D imaging as described in Kozerke
et al. 2004 was patented and subsequently licensed to Philips Healthcare
[6]. KCL implemented the technology on Philips clinical MR systems and the
fundamental implementation became available on MR systems as a clinical
product option in 2007/08 [7,8]. Today the method is available on 80% of
all high-end MR systems for cardiovascular imaging around the world.
Philips says of the technology that "k-t BLAST represents a quantum leap
in the speed of cardiac MRI. Up to 5 times faster than other methods, k-t
BLAST substantially reduces cardiac MRI scan times, while retaining
excellent image quality. k-t BLAST makes cine cardiac MRI in a single
breath hold a reality, and is the fastest cine cardiac MRI in the
industry" [7].
During an MR scan, patients need to hold their breath and often several
(2-5) repeat scans are required to obtain all data covering the target
anatomy. The whole breath holding process may be particularly difficult
for patients with cardiovascular disorders or other illnesses affecting
lung function. Using the k-t technology, significant speed-up of a range
of key MR imaging protocols has been achieved in practice, directly
impacting patient experience. Total scan times are reduced by four to ten
times to benefit patient comfort and compliance. Many dynamic MR imaging
protocols now require only a single breathhold rather than multiple
repetitions. As a result, the quality and consistency of data are directly
improved hence requiring fewer repeat scans and the overall exam times are
significantly reduced.
In addition to these benefits, k-t methods have enabled some key
diagnostic protocols. Of particular importance has been the possibility to
acquire whole-heart 3D MR perfusion data in patients for the first time.
Data from KCL patient studies [2] have proven the diagnostic performance
and accuracy of the method in a single centre study. These results have
led to on-going multi-centre trials in Germany, Switzerland and the UK to
assess the diagnostic performance of quantitative whole-heart 3D perfusion
imaging, relative to Fractional Flow Reserve measurements as the invasive
reference [9]. Based on these clinical data there is already sufficient
evidence that 3D perfusion imaging is at least as good as single photon
emission computed tomograohy (SPECT), while reducing the cost of the exam
by at least two-fold. In addition the MR method does not employ ionising
radiation, hence protecting the patient from radiation risks [9] and
permitting longitudinal monitoring in a safe and non-invasive manner.
Recognising the potential of KCL research in spatiotemporal undersampling
for cardiac perfusion imaging, GyroTools LLC, a Swiss-based company,
developed and distributed efficient image reconstruction codes that formed
the basis of the on-going multi-centre perfusion trial. The software was
made available to selected sites starting in 2009. In 2012 GyroTools LLC
and PMOD Technologies joined forces to develop and launch a clinical
perfusion solution, including kinetic modelling for quantitative
myocardial blood flow assessment, based on MR spatiotemporal data
undersampling (10a).
Clinical results from perfusion imaging with k-t methods have led to
further work on improving stratification of patients. Using the method
devised it has become possible to quantify energy efficiency in the
cardiovascular system by assessing both kinetic and turbulent kinetic
energy in larger vessels [5]. It has been demonstrated that this allows
for a quantitative assessment of the hemodynamic consequences of stenotic
heart valves. In conjunction with the GTFlow flow analysis package offered
by GyroTools LLC, a powerful flow imaging solution is offered (10b).
Sources to corroborate the impact
- Patent WO2005003804/EP1651975/US2006208730/. K-t blast and
k-t sense magnetic resonance imaging. Publication date: 13.1.2005:
http://www.google.com/patents/WO2005003804A1?cl=en
- Philips Healthcare, Best, The Netherlands
http://www.healthcare.philips.com/main/products/mri/innovations/freewave/
- Letter of corroboration from Philips Healthcare on file and at:
http://www.kcl.ac.uk/medicine/research/divisions/imaging/ref.aspx
- Manka R, et al. Multicenter evaluation of dynamic three-dimensional
whole-heart myocardial perfusion imaging for the detection of coronary
artery disease defined by fractional flow reserve. J CARDIOV MAGN RESON
2013;15(Suppl 1):O103 doi:10.1186/1532-429X-15-S1-O103:
http://www.jcmr-online.com/content/15/S1/O103
- GyroTools LLC, Winterthur, Switzerland
a. Perfusion imaging brochure: http://www.gyrotools.com/products/GTPerfusion_2013.pdf
b. Flow imaging brochure: http://www.gyrotools.com/products/ktPCAFlow_2013.pdf
c. Letter of corroboration from GyroTools on file at:
http://www.kcl.ac.uk/medicine/research/divisions/imaging/ref.aspx