ARC01 - ZooMS: archaeozoology, food security, traceability and authentication
Submitting Institution
University of YorkUnit of Assessment
Geography, Environmental Studies and ArchaeologySummary Impact Type
PoliticalResearch Subject Area(s)
Biological Sciences: Biochemistry and Cell Biology
Medical and Health Sciences: Clinical Sciences
Summary of the impact
    Demand for cheap meat has increased the potential for fraudulent food
      labeling, which exploded in
      public debate in 2009 and 2013. Zooarchaeology by Mass Spectrometry
      (ZooMS) is a technology
      originally developed to identify bone fragments from archaeological sites
      by determining the
      sequence of the bone protein, collagen. By applying this research to the
      food industry we have
      provided evidence of fraud. In 2009 ZooMS identified pig and cow gelatin
      being pumped into
      chicken meat to increase weight. Action taken by the food producers when
      confronted with our
      research respected the beliefs of up to 3.8milliona people in
      the UK who choose to avoid pig and
      cow products.
    Underpinning research
    ZooMS is a procedure developed at York by Professor Matthew Collins
      (Archaeology), in
      collaboration with Professor Jane Thomas-Oates (Chemistry), to identify
      the animal origin of
      worked bone and bone fragments from archaeological sites1. Bone
      is composed of two major
      constituents, mineral (apatite) and protein (collagen). Most ancient
      proteins decay, by cross-linking
      to other molecules (humification) and by cleavage (hydrolysis) into random
      fragments. These twin
      processes make analysis of ancient proteins a challenging research area.
    We have been researching the application of protein mass spectrometric
      methods to analyse
      proteins in archaeological bones2. The highly conserved main
      collagen chain is a robust triple helix
      which (we believe) is stabilised by radial compression — the so-called
      Link-Lock hypothesis3. Upon
      heating or treatment with strong acid or alkali, the chains unravel to
      form gelatin. The structural
      features that make collagen so stable were, for a long time, considered to
      make collagen useless
      as a species indicator. Our research illustrated that the `conserved'
      repetitive collagen sequence
      has sufficient variation to fingerprint not only ancient bone but other
      collagen based tissues — a
      method we term ZooMS (illustrated in Figure 1 below). The method has been
      reported widely (e.g.
        Chemistry World, Nov 2010, 44; Science, 2010, 330,
      28-29), and a large database of collagen
      amino acid sequences has been assembled.
    Our development of robust protein mass spectrometric methods has many
      potential archaeological
      applications. It also offers great potential in other areas. This case
      study reports the detection of
      food fraud in gelatin-based plumping agents used to rehydrate chicken
      meat; gelatin is produced
      from collagen in bone
      on boiling The
      ZooMS technique is
      superior to DNA to
      test the animal origin
      of this type of highly
      processed material
      as DNA can be agent
      detected in trace
      amounts, whilst
      ZooMS tests the
      product (the protein
      itself). In highly
      processed materials
      the original DNA is
      destroyed, but minute
      quantities of fresh
      tissue (e.g. blood)
      from another animal
      can be used to mask
      the original source.
      Alongside ZooMS,
      our research used
      racemization analysis (developed by Collins5, York is home to
      the NERC recognised NEAAR
      facility) to measure the extent of processing in plumping agents and
      commercial gelatins. Analysis
      of the plumping agent revealed that they were more aggressively treated
      than the gelatins (Fig. 2),
      to a point well beyond the survival of DNA.
 
    Key BioArCh Researchers and Positions Held
    Prof. Matthew Collins, Reader then Professor, Founder and head of
      BioArCh; Dr Mike Buckley,
      October 2005-May 2010. PhD student then NERC PDRA; Dr Enrico Cappellini,
      PDRA October
      2005-8; Dr Hannah Koon, October 2003-June 2010, PhD student, then Wellcome
      Trust Fellow
      then AHRC PDRA.
    References to the research
    
1. Buckley, M., Collins, M., Thomas-Oates, J., & Wilson, J.C. (2009).
      Species identification by
      analysis of bone collagen using matrix-assisted laser
      desorption/ionisation time-of-flight mass
      spectrometry. Rapid communications in mass spectrometry, 23(23),
      3843-3854. 47 citations —
      DOI: 10.1002/rcm.4316 (Available in REF2, Chemistry).
     
2. Cappellini, E., Jensen, L.J., Szklarczyk, D., Ginolhac, A., da
      Fonseca, R.A.R., Stafford, T.W.,
      Holen, S.R., Collins, M.J., Orlando, L., Willerslev, E., Gilbert, M.T.P.,
      Olsen, J.V., 2012.
      Proteomic analysis of a pleistocene mammoth femur reveals more than one
      hundred ancient
      bone proteins. J. Proteome Res. 11, 917-926. doi:
      10.1021/pr200721u International media
      coverage. 11 citations
     
"The study...unleashes the field of palaeoproteomics by identifying
        prehistoric protein
        sequences that could be used to help identify species, evolutionary
        relationships and even,
        perhaps, ancient diseases" Nature
      doi:10.1038/nature.2011.9601
    
3. Covington, A.D., Song, L., Suparno, O., Collins, M.J., & Koon,
      H.E.C., (2008). Link-Lock: the
      mechanism of stabilising collagen by chemical reactions. J. Soc.
        Leather Technol. Chem, 92,
      1-7. 10 citations. Available upon request
     
"[The link-lock hypothesis] has made it possible to take quantum
        steps forward in
        developments in tanning technology" (Tanning Chemistry: The
        Science of Leather. p. 464).
    
4. Reece, P., Chassaigne, H., Collins, M., Buckley, M., 2012. Proteomic
      analysis of meat and
      bone meal and animal feed, in: Jorgensen J.S., B.V. (Ed.), Detection,
        Identification and
        Quantification of Processed Animal Proteins in Feedingstuffs.
      Presses Universitaires de
      Namur, Namur, pp. 113-124. Available on request.
     
5. Willerslev, E., Cappellini, E., Boomsma, W., et al., Collins, M.J.,
      2007. Ancient biomolecules
      from deep ice cores reveal a forested southern Greenland. Science
      317, 111-114. 157
        citations doi: 10.1126/science.1141758
     
Citation data: SCOPUS unless journal not indexed, then Google Scholar
        17.10.2013
    Funding
    Decoding domesticate DNA in archaeological bone and manuscripts
      (EC ERC-2011-AdG
      295729-CodeX 1/04/12 - 31/03/17, £390,000) Collins Co-I
    Fish farming tracked from fragmentary remains using a universal bone
        barcode (AHRC
      Speculative Research Award, AH/G011281/1) 05/09 - 04/10, Collins,
      Thomas-Oates,
      £137,000
    A new method for detecting the animal origin of collagen, (NERC
      NE/G000204/1) Collins,
      Thomas-Oates, 20/10/08 - 19/01/10 £129,093,
    Paleoproteomics: a revolution in ancient biomolecular studies?
      (NERC NE/C511148/1) project
      grant to Collins, Thomas-Oates, Genever, 2006-2008. £192,726
    Optimisation of bone reactivity for use in the remediation of toxic
        metals (NERC, GR9/01656,
      CONNECT B) Valsami-Jones, Wess, Collins, 1/04/2004 - 31/03/2007, £129,000
    Details of the impact
    The new research has had impacts in the detection of food contaminants.
      As ready meals
      containing meat have become more popular (now estimated at 5% of the UK
      food budget), the
      potential for fraudulent food labelling has increased. The potential for
      mislabelling came to the fore
      in 2009 and again in 2013. The Food and Environment Research Agency
      (Fera), part of DEFRA,
      guides the science evidence base in the food and environment sectors to
      ensure that UK policy-makers 
	  are well informed, undertaking both surveillance and research and
      development activities.
      Its services underpin regulatory frameworks as well as supporting
      religious and cultural factors
      such as food provenance (e.g. halal or kosher).
    Fera was member of the European SAfe FEED-Processed Animal Proteins
      (SAFEED-PAP),
      alongside our NERC CONNECT B partner, Stephen Woodgate, then of Prosper De
      Mulder Ltd
      (PDM) and Technical Director of the European Fat Processing and Renderers
      Association. Our
      findings that collagen was thermally stable and that animal origin could
      be identified by a peptide
      fingerprint were reported by Woodgate to the SAFEED-PAP team and Collins
      was invited to
      become an advisor to the project. Working with Fera scientists we
      demonstrated that ZooMS was
      able to discriminate (thermally treated) meat and bone meal particles. Dr
      Vincent Baeten,
      coordinator of SAFEED-PAP and Head of the Food and Feed Unit for the EU
      Reference
      Laboratory, applauded "...the innovative analytical solution that the
        Department has proposed for
        detection of animal bone, using protein mass-spectrometry...[and] the
        effort made...to adapt this
        method coming from archaeology to feed safety..."b.
    Collins was subsequently invited by Fera to apply the technique within a
      Food Standards Agency
      (FSA) investigation into the suspected use of pig and cow-derived gelatin
      (so-called plumping
      agents) used to re-hydrate air-freighted chicken meat. ZooMS confirmed
      that the FSA's suspicions
      were correct.
    The results of the investigation were broadcast on 14 July 2009 to an
      estimated audience of 5
      million (What's really in our food?)c. Dr Shuja Shafi of
      the Muslim Council of Britain stated that
      Muslims would be extremely annoyed and extremely distressed to learn that
      chicken sold as halal
      contains protein from prohibited species and they would be extremely angry
      if this turned out to be
      a deliberate deception as Muslims rely heavily on accurate food labelling
      (minutes 53 - 55 of
      programmec). The discovery of the fraud was widely publicised
      in the UK press and reported in the
      Annual Report of the Chief Scientist of the FSAd. Secretary
      general of the Hindu Forum of Britain,
      Bharti Tailor, was quoted on 04/06/2009 as saying "Eating beef is
        expressly forbidden because
        cows are considered to be sacred as they are a representation of the
        bounty of the gods, even
        unknowingly. The fact that the protein powders injected into chickens
        served in restaurants and
        cafes contain even traces of beef or pork is horrific"c.
    As a direct consequence of the investigation, food industry suppliers in
      Spain, Germany and the
      Netherlands were inspected and the largest supplier of poultry to the
      Asian market in the UK (Euro
      Foods Group) changed their practices. An announcement on their website
      (consulted July 2009)
      stated that in order to 'eradicate any future question marks and/or
        confusion over non-chicken
        protein detection levels in our product range, Euro Foods Group has
        decided to switch to a
        vegetable derived protein instead, a move which was completed by 29th
        June 2009', (see also
      minutes 51-52 of programme in reference 2). Due to the sensitive nature of
      the issue we do not
      know the full impact of our work.
    We signed a license agreement with Fera in 2011 giving them commercial
      access to our collagen
      databases for use in the future forensic work for a fee of 5% of income
      generation. In a DEFRA-
      funded study (£91k contract, 01/03/11 to 31/03/12), they validated the
      technique and found it to be
      superior to commercially-available immunochemical and DNA based assays
      (Grundy et al.
      submitted).
    The impact of this research extends internationally through the Fera
      contract, which included an
      inter-laboratory trial, during which the analytical method was
      successfully transferred to alternative
      food enforcement laboratories in Europe and North America (including the
      US FDA). York provided
      training in the methodology, species-specific marker peptide sequences and
      data assessment from
      these trials, our choice of mammoth gelatin as the positive control (CBC
      News: Jan 03, 2011), was
      in recognition of the archaeological origins of the method. A further
      DEFRA-funded project
      (FA0126) is transferring the method to other food matrices for Fera
      customers to screen foods
      destined for the Halal markets, products such as gelatin capsules (for
      therapeutic/supplement
      formulations) aimed at vegetarian customers and in the wake of the 2013
      controversy, horse. This
      research therefore has impact on public and commercial servicese
      as well as public debate.
    Writing about the impact of the team's relationship with
      FERA, Adrian Charlton, Head of Chemical
      and Biochemical Profiling at FERA, wrote: "...FERA's close
        collaboration with Professors Thomas-Oates
        and Collins has led to a number of technologies that we routinely
        exploit to deliver ongoing
        project work and to underpin project proposals, papers and publicity
        material. In particular, we
        have undertaken a number of studies to determine peptide sequences that
        can be used for the
        species origin determination in collaboration with you and your
        colleagues. These projects have led
        to Fera offering an international service for the
        species identification of gelatin and Meat and
        Bone Meal in food and feed, respectively...".
    Sources to corroborate the impact 
    a. 263,000 Jews, 817,000 Hindus, 2.7M Muslims, 2011 Census (England and
      Wales)
    b. Head of the Food and Feed Unit, EU Reference Laboratory
    c. BBC programme http://www.bbc.co.uk/programmes/b00lrjk4
      audience figures from
      http://www.tomheap.com/?cat=4
      — broadcasts
    4 June 2009, The Independent, `Chicken injected with beef waste
      sold in UK'
      http://www.independent.co.uk/life-style/food-and-drink/news/chicken-injected-with-beef-waste-sold-in-uk-1696407.html
    5 June 2009 The Mail `Chicken secretly injected with beef and
      pork products served in UK
      restaurants'
      http://www.dailymail.co.uk/news/article-1190796/Chicken-secretly-injected-beef-pork-products-sold-UK-restaurants.html
    17 Sept 2009 The Sun, `Chicken fill it'
      http://www.thesun.co.uk/sol/homepage/news/
        2464679/Chicken-fill-it.html
    d. Annual Report of the Chief scientist of the Food Standards Agency
      2009/10. p. 66
       http://www.food.gov.uk/multimedia/pdfs/csr0910.pdf. Also FSA website 16
      Sept 2009 `New
        study highlights undeclared ingredients in chicken products'
    e. Head of Chemical and Biochemical Profiling at FERA