ARC01 - ZooMS: archaeozoology, food security, traceability and authentication
Submitting Institution
University of YorkUnit of Assessment
Geography, Environmental Studies and ArchaeologySummary Impact Type
PoliticalResearch Subject Area(s)
Biological Sciences: Biochemistry and Cell Biology
Medical and Health Sciences: Clinical Sciences
Summary of the impact
Demand for cheap meat has increased the potential for fraudulent food
labeling, which exploded in
public debate in 2009 and 2013. Zooarchaeology by Mass Spectrometry
(ZooMS) is a technology
originally developed to identify bone fragments from archaeological sites
by determining the
sequence of the bone protein, collagen. By applying this research to the
food industry we have
provided evidence of fraud. In 2009 ZooMS identified pig and cow gelatin
being pumped into
chicken meat to increase weight. Action taken by the food producers when
confronted with our
research respected the beliefs of up to 3.8milliona people in
the UK who choose to avoid pig and
cow products.
Underpinning research
ZooMS is a procedure developed at York by Professor Matthew Collins
(Archaeology), in
collaboration with Professor Jane Thomas-Oates (Chemistry), to identify
the animal origin of
worked bone and bone fragments from archaeological sites1. Bone
is composed of two major
constituents, mineral (apatite) and protein (collagen). Most ancient
proteins decay, by cross-linking
to other molecules (humification) and by cleavage (hydrolysis) into random
fragments. These twin
processes make analysis of ancient proteins a challenging research area.
We have been researching the application of protein mass spectrometric
methods to analyse
proteins in archaeological bones2. The highly conserved main
collagen chain is a robust triple helix
which (we believe) is stabilised by radial compression — the so-called
Link-Lock hypothesis3. Upon
heating or treatment with strong acid or alkali, the chains unravel to
form gelatin. The structural
features that make collagen so stable were, for a long time, considered to
make collagen useless
as a species indicator. Our research illustrated that the `conserved'
repetitive collagen sequence
has sufficient variation to fingerprint not only ancient bone but other
collagen based tissues — a
method we term ZooMS (illustrated in Figure 1 below). The method has been
reported widely (e.g.
Chemistry World, Nov 2010, 44; Science, 2010, 330,
28-29), and a large database of collagen
amino acid sequences has been assembled.
Our development of robust protein mass spectrometric methods has many
potential archaeological
applications. It also offers great potential in other areas. This case
study reports the detection of
food fraud in gelatin-based plumping agents used to rehydrate chicken
meat; gelatin is produced
from collagen in bone
on boiling The
ZooMS technique is
superior to DNA to
test the animal origin
of this type of highly
processed material
as DNA can be agent
detected in trace
amounts, whilst
ZooMS tests the
product (the protein
itself). In highly
processed materials
the original DNA is
destroyed, but minute
quantities of fresh
tissue (e.g. blood)
from another animal
can be used to mask
the original source.
Alongside ZooMS,
our research used
racemization analysis (developed by Collins5, York is home to
the NERC recognised NEAAR
facility) to measure the extent of processing in plumping agents and
commercial gelatins. Analysis
of the plumping agent revealed that they were more aggressively treated
than the gelatins (Fig. 2),
to a point well beyond the survival of DNA.
Key BioArCh Researchers and Positions Held
Prof. Matthew Collins, Reader then Professor, Founder and head of
BioArCh; Dr Mike Buckley,
October 2005-May 2010. PhD student then NERC PDRA; Dr Enrico Cappellini,
PDRA October
2005-8; Dr Hannah Koon, October 2003-June 2010, PhD student, then Wellcome
Trust Fellow
then AHRC PDRA.
References to the research
1. Buckley, M., Collins, M., Thomas-Oates, J., & Wilson, J.C. (2009).
Species identification by
analysis of bone collagen using matrix-assisted laser
desorption/ionisation time-of-flight mass
spectrometry. Rapid communications in mass spectrometry, 23(23),
3843-3854. 47 citations —
DOI: 10.1002/rcm.4316 (Available in REF2, Chemistry).
2. Cappellini, E., Jensen, L.J., Szklarczyk, D., Ginolhac, A., da
Fonseca, R.A.R., Stafford, T.W.,
Holen, S.R., Collins, M.J., Orlando, L., Willerslev, E., Gilbert, M.T.P.,
Olsen, J.V., 2012.
Proteomic analysis of a pleistocene mammoth femur reveals more than one
hundred ancient
bone proteins. J. Proteome Res. 11, 917-926. doi:
10.1021/pr200721u International media
coverage. 11 citations
"The study...unleashes the field of palaeoproteomics by identifying
prehistoric protein
sequences that could be used to help identify species, evolutionary
relationships and even,
perhaps, ancient diseases" Nature
doi:10.1038/nature.2011.9601
3. Covington, A.D., Song, L., Suparno, O., Collins, M.J., & Koon,
H.E.C., (2008). Link-Lock: the
mechanism of stabilising collagen by chemical reactions. J. Soc.
Leather Technol. Chem, 92,
1-7. 10 citations. Available upon request
"[The link-lock hypothesis] has made it possible to take quantum
steps forward in
developments in tanning technology" (Tanning Chemistry: The
Science of Leather. p. 464).
4. Reece, P., Chassaigne, H., Collins, M., Buckley, M., 2012. Proteomic
analysis of meat and
bone meal and animal feed, in: Jorgensen J.S., B.V. (Ed.), Detection,
Identification and
Quantification of Processed Animal Proteins in Feedingstuffs.
Presses Universitaires de
Namur, Namur, pp. 113-124. Available on request.
5. Willerslev, E., Cappellini, E., Boomsma, W., et al., Collins, M.J.,
2007. Ancient biomolecules
from deep ice cores reveal a forested southern Greenland. Science
317, 111-114. 157
citations doi: 10.1126/science.1141758
Citation data: SCOPUS unless journal not indexed, then Google Scholar
17.10.2013
Funding
Decoding domesticate DNA in archaeological bone and manuscripts
(EC ERC-2011-AdG
295729-CodeX 1/04/12 - 31/03/17, £390,000) Collins Co-I
Fish farming tracked from fragmentary remains using a universal bone
barcode (AHRC
Speculative Research Award, AH/G011281/1) 05/09 - 04/10, Collins,
Thomas-Oates,
£137,000
A new method for detecting the animal origin of collagen, (NERC
NE/G000204/1) Collins,
Thomas-Oates, 20/10/08 - 19/01/10 £129,093,
Paleoproteomics: a revolution in ancient biomolecular studies?
(NERC NE/C511148/1) project
grant to Collins, Thomas-Oates, Genever, 2006-2008. £192,726
Optimisation of bone reactivity for use in the remediation of toxic
metals (NERC, GR9/01656,
CONNECT B) Valsami-Jones, Wess, Collins, 1/04/2004 - 31/03/2007, £129,000
Details of the impact
The new research has had impacts in the detection of food contaminants.
As ready meals
containing meat have become more popular (now estimated at 5% of the UK
food budget), the
potential for fraudulent food labelling has increased. The potential for
mislabelling came to the fore
in 2009 and again in 2013. The Food and Environment Research Agency
(Fera), part of DEFRA,
guides the science evidence base in the food and environment sectors to
ensure that UK policy-makers
are well informed, undertaking both surveillance and research and
development activities.
Its services underpin regulatory frameworks as well as supporting
religious and cultural factors
such as food provenance (e.g. halal or kosher).
Fera was member of the European SAfe FEED-Processed Animal Proteins
(SAFEED-PAP),
alongside our NERC CONNECT B partner, Stephen Woodgate, then of Prosper De
Mulder Ltd
(PDM) and Technical Director of the European Fat Processing and Renderers
Association. Our
findings that collagen was thermally stable and that animal origin could
be identified by a peptide
fingerprint were reported by Woodgate to the SAFEED-PAP team and Collins
was invited to
become an advisor to the project. Working with Fera scientists we
demonstrated that ZooMS was
able to discriminate (thermally treated) meat and bone meal particles. Dr
Vincent Baeten,
coordinator of SAFEED-PAP and Head of the Food and Feed Unit for the EU
Reference
Laboratory, applauded "...the innovative analytical solution that the
Department has proposed for
detection of animal bone, using protein mass-spectrometry...[and] the
effort made...to adapt this
method coming from archaeology to feed safety..."b.
Collins was subsequently invited by Fera to apply the technique within a
Food Standards Agency
(FSA) investigation into the suspected use of pig and cow-derived gelatin
(so-called plumping
agents) used to re-hydrate air-freighted chicken meat. ZooMS confirmed
that the FSA's suspicions
were correct.
The results of the investigation were broadcast on 14 July 2009 to an
estimated audience of 5
million (What's really in our food?)c. Dr Shuja Shafi of
the Muslim Council of Britain stated that
Muslims would be extremely annoyed and extremely distressed to learn that
chicken sold as halal
contains protein from prohibited species and they would be extremely angry
if this turned out to be
a deliberate deception as Muslims rely heavily on accurate food labelling
(minutes 53 - 55 of
programmec). The discovery of the fraud was widely publicised
in the UK press and reported in the
Annual Report of the Chief Scientist of the FSAd. Secretary
general of the Hindu Forum of Britain,
Bharti Tailor, was quoted on 04/06/2009 as saying "Eating beef is
expressly forbidden because
cows are considered to be sacred as they are a representation of the
bounty of the gods, even
unknowingly. The fact that the protein powders injected into chickens
served in restaurants and
cafes contain even traces of beef or pork is horrific"c.
As a direct consequence of the investigation, food industry suppliers in
Spain, Germany and the
Netherlands were inspected and the largest supplier of poultry to the
Asian market in the UK (Euro
Foods Group) changed their practices. An announcement on their website
(consulted July 2009)
stated that in order to 'eradicate any future question marks and/or
confusion over non-chicken
protein detection levels in our product range, Euro Foods Group has
decided to switch to a
vegetable derived protein instead, a move which was completed by 29th
June 2009', (see also
minutes 51-52 of programme in reference 2). Due to the sensitive nature of
the issue we do not
know the full impact of our work.
We signed a license agreement with Fera in 2011 giving them commercial
access to our collagen
databases for use in the future forensic work for a fee of 5% of income
generation. In a DEFRA-
funded study (£91k contract, 01/03/11 to 31/03/12), they validated the
technique and found it to be
superior to commercially-available immunochemical and DNA based assays
(Grundy et al.
submitted).
The impact of this research extends internationally through the Fera
contract, which included an
inter-laboratory trial, during which the analytical method was
successfully transferred to alternative
food enforcement laboratories in Europe and North America (including the
US FDA). York provided
training in the methodology, species-specific marker peptide sequences and
data assessment from
these trials, our choice of mammoth gelatin as the positive control (CBC
News: Jan 03, 2011), was
in recognition of the archaeological origins of the method. A further
DEFRA-funded project
(FA0126) is transferring the method to other food matrices for Fera
customers to screen foods
destined for the Halal markets, products such as gelatin capsules (for
therapeutic/supplement
formulations) aimed at vegetarian customers and in the wake of the 2013
controversy, horse. This
research therefore has impact on public and commercial servicese
as well as public debate.
Writing about the impact of the team's relationship with
FERA, Adrian Charlton, Head of Chemical
and Biochemical Profiling at FERA, wrote: "...FERA's close
collaboration with Professors Thomas-Oates
and Collins has led to a number of technologies that we routinely
exploit to deliver ongoing
project work and to underpin project proposals, papers and publicity
material. In particular, we
have undertaken a number of studies to determine peptide sequences that
can be used for the
species origin determination in collaboration with you and your
colleagues. These projects have led
to Fera offering an international service for the
species identification of gelatin and Meat and
Bone Meal in food and feed, respectively...".
Sources to corroborate the impact
a. 263,000 Jews, 817,000 Hindus, 2.7M Muslims, 2011 Census (England and
Wales)
b. Head of the Food and Feed Unit, EU Reference Laboratory
c. BBC programme http://www.bbc.co.uk/programmes/b00lrjk4
audience figures from
http://www.tomheap.com/?cat=4
— broadcasts
4 June 2009, The Independent, `Chicken injected with beef waste
sold in UK'
http://www.independent.co.uk/life-style/food-and-drink/news/chicken-injected-with-beef-waste-sold-in-uk-1696407.html
5 June 2009 The Mail `Chicken secretly injected with beef and
pork products served in UK
restaurants'
http://www.dailymail.co.uk/news/article-1190796/Chicken-secretly-injected-beef-pork-products-sold-UK-restaurants.html
17 Sept 2009 The Sun, `Chicken fill it'
http://www.thesun.co.uk/sol/homepage/news/
2464679/Chicken-fill-it.html
d. Annual Report of the Chief scientist of the Food Standards Agency
2009/10. p. 66
http://www.food.gov.uk/multimedia/pdfs/csr0910.pdf. Also FSA website 16
Sept 2009 `New
study highlights undeclared ingredients in chicken products'
e. Head of Chemical and Biochemical Profiling at FERA