Log in
First commercialised in 1996, Quadrupole Orthogonal Acceleration Time of Flight (Q-TOF) Mass Spectrometry (MS) has become the most important of the enabling technologies for structural characterisation in `omics research including Proteomics, Metabolomics, Glycomics and Lipidomics. Prior to this revolutionary development, mass spectrometric methods lacked the sensitivity and resolution needed for unambiguous structural characterisation at the femtomole (10- 15M) level. Today, research is both enabled and accelerated by the use of many thousands of Q-TOF instruments in medical research, cancer research, pharmaceutical, biotechnology, forensics and chemical industry laboratories worldwide. As a consequence of this innovation, which resulted from the research and consultancy advice of Professor Howard Morris, industry has invested in R&D, and highly skilled (mainly British) jobs have been created as well as protected.
Research at the University of Oxford's Glycobiology Institute (OGBI) has led to the development of `state-of-the-art' platform technologies for the analysis of oligosaccharides (sugars) that are linked to proteins and lipids. These enabling technologies have had major impacts worldwide on drug discovery programmes, have enabled robust procedures to be developed for the quality control of biopharmaceutical production, and have been widely adopted by the pharmaceutical industry.
Carol Robinson's research at the University of Oxford in the mid-1990s led directly to her proposing a new type of mass spectrometer to enable more detailed analyses of larger molecular assemblies than previously possible. The design is marketed worldwide by Micromass UK Ltd (part of Waters Corporation), generating a new area of research within industry and academia in which intact protein complexes can be analysed by mass spectrometry and the chemistry of small molecules and drugs bound to them investigated, thus contributing to the search for novel pharmaceuticals. Since 2008, Waters' successful commercialisation of the new technology has led to sales worth many millions of dollars.
DICHROWEB is a comprehensive, user-friendly server that provides access to computational tools for the determination of protein secondary structure from data obtained through circular dichroism (CD) and synchrotron radiation (SRCD) spectroscopy. The Protein Circular Dichroism Data Bank (PCDDB) is a database of spectra obtained using these techniques and allied data. Both resources are widely and increasingly used in many countries and are proving useful in industrial research (for example, in drug discovery) as well as academia and advanced teaching. DICHROWEB currently has over 3,600 registered users and over 375,000 DICHROWEB analyses have been run. Since the launch of PCDDB in 2009, the database has had over 175,000 unique hits from 41 different countries, and 89,890 downloads.
Novel rapid methods for predicting protein structure, particularly functional loop structures, have been developed by researchers at the University of Oxford. These have been made accessible to a large audience through a suite of computational tools. The methods have had general impact through download and online access and specific impact through extensive use within UCB Pharma. The tools are much faster than other methods, creating equal or better predictions in approximately a thousandth of the time. Commonly exploited by UCB Pharma in their drug discovery pipeline, they have cut computational cost, but, more importantly, they have greatly reduced the time for process improvements. UCB Pharma estimate that the tool pyFREAD alone saves over £5 million in the discovery costs for a single drug molecule. FREAD (a version of pyFREAD coded in C) is also being used more widely, for example by Crysalin Ltd and InhibOx.
Research carried out within Imperial's Life Sciences department led to a collection of new kit solutions to screen the crystallisation conditions of various membrane proteins. These screens were exclusively commercialized by Molecular Dimensions, a UK company, in 2002, 2003 and 2008 under license from Imperial College London. They are the primary screening kit in membrane protein crystallization that is commercially available. These screens have helped to screen the crystallization conditions of a wide range of membrane proteins, leading to many new structures. Molecular Dimensions has sold [text removed for publication] screens, worth more than [text removed for publication], to both academia and industry all over the world.
Research carried out at Birkbeck's Department of Computer Science and Information Systems since 2000 has produced techniques for the management and integration of complex, heterogeneous life sciences data not previously possible with large-scale life sciences data repositories. The research has involved members of the department and researchers from the European Bioinformatics Institute (EBI) and University College London (UCL) and has led to the creation of several resources providing information about genes and proteins. These resources include the BioMap data warehouse, which integrated the CATH database — holding a classification of proteins into families according to their structure, the Gene3D database — holding information about protein sequences, and other related information on protein families, structures and the functions of proteins such as enzymes. These resources are heavily utilised by companies worldwide to explore relationships between protein structure and protein function and to aid in drug design.
As sophisticated proteomics methodologies are increasingly embraced by both academics and industry across the globe, growth in this area is set to explode. The University of Dundee has a leadership position in quantitative proteomics technology, through the expertise of Professor Angus Lamond. Dundee Cell Products Ltd is a University of Dundee spin-out company that was created to commercialise life sciences technology and reagents, and to exploit technology and expertise in proteomics developed at the College of Life Sciences. As of 2013, DCP offers >5,000 research products and six contract research services, centred around quantitative proteomics.
The CATH classification of protein structure, developed at the Institute of Structural and Molecular Biology, UCL, by Janet Thornton and Christine Orengo, has been used widely across the pharmaceutical industry and academia to guide experiments on proteins. This has led to significant cost and time savings in drug discovery. The UCL-hosted online CATH database receives around 10,000 unique visitors per month, and is a partner in InterPro — the most frequently accessed protein function annotation server available.
Impact: EaStCHEM spin out Albachem (1994), subsequently incorporated into the Almac group, enabling the latter company to become a world leader in the provision of chemically synthesised proteins.
Significance: Chemical synthesis is competitive with recombinant methods for commercial production of the therapeutic polypeptides that represent ~50% of drugs in big pharma pipelines and have a market value in 2008 of over $13B. The value attributable to Ramage's methods for polypeptide syntheses over the REF period is estimated at approximately £6M.
Beneficiaries: Drug manufacturers, contract research organisations, patients, clinicians.
Research: Studies (1993-6) led by Ramage (at the University of Edinburgh) on new methods for high-yield total syntheses and purification of long polypeptides.
Reach: Almac's protein-manufacturing team remains in the UK with 24 staff members. The Almac Group, headquartered in N. Ireland, has 3300 employees globally (1300 outside UK) and sells to 600 companies worldwide.