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DICHROWEB is a comprehensive, user-friendly server that provides access to computational tools for the determination of protein secondary structure from data obtained through circular dichroism (CD) and synchrotron radiation (SRCD) spectroscopy. The Protein Circular Dichroism Data Bank (PCDDB) is a database of spectra obtained using these techniques and allied data. Both resources are widely and increasingly used in many countries and are proving useful in industrial research (for example, in drug discovery) as well as academia and advanced teaching. DICHROWEB currently has over 3,600 registered users and over 375,000 DICHROWEB analyses have been run. Since the launch of PCDDB in 2009, the database has had over 175,000 unique hits from 41 different countries, and 89,890 downloads.
Researchers in Cambridge have developed a data standard for storing and exchanging data between different programs in the field of macromolecular NMR spectroscopy. The standard has been used as the foundation for the development of an open source software suite for NMR data analysis, leading to improved research tools which have been widely adopted by both industrial and academic research groups, who benefit from faster drug development times and lower development costs. The CCPN data standard is an integral part of major European collaborative efforts for NMR software integration, and is being used by the major public databases for protein structures and NMR data, namely Protein Data Bank in Europe (PDBe) and BioMagResBank.
The research improves digital data archives by embedding computation into the storage controllers that maintain the integrity of the data within the archive. This opens up a number of possibilities:
This has impact on three different classes of beneficiary:
Open Data has lowered barriers to data access, increased government transparency and delivered significant economic, social and environmental benefits. Southampton research and leadership has led to the UK Public Data Principles, which were enshrined in the UK Government Open Data White Paper, and has led to data.gov.uk, which provides access to 10,000 government datasets. The open datasets are proving means for strong citizen engagement and are delivering economic benefit through the £10 million Open Data Institute. These in turn have placed the UK at the forefront of the global data revolution: the UK experience has informed open data initiatives in the USA, EU and G8.
Targeted Projection Pursuit (TPP) — developed at Northumbria University — is a novel method for interactive exploration of high-dimension data sets without loss of information. The TPP method performs better than current dimension-reduction methods since it finds projections that best approximate a target view enhanced by certain prior knowledge about the data. "Valley Care" provides a Telecare service to over 5,000 customers as part of Northumbria Healthcare NHS Foundation Trust, and delivers a core service for vulnerable and elderly people (receiving an estimated 129,000 calls per annum) that allows them to live independently and remain in their homes longer. The service informs a wider UK ageing community as part of the NHS Foundation Trust.
Applying our research enabled the managers of Valley Care to establish the volume, type and frequency of calls, identify users at high risk, and to inform the manufacturers of the equipment how to update the database software. This enabled Valley Care managers and staff to analyse the information quickly in order to plan efficiently the work of call operators and social care workers. Our study also provided knowledge about usage patterns of the technology and valuably identified clients at high risk of falls. This is the first time that mathematical and statistical analysis of data sets of this type has been done in the UK and Europe.
As a result of applying the TPP method to its Call Centre multivariate data, Valley Care has been able to transform the quality and efficiency of its service, while operating within the same budget.
The CATH classification of protein structure, developed at the Institute of Structural and Molecular Biology, UCL, by Janet Thornton and Christine Orengo, has been used widely across the pharmaceutical industry and academia to guide experiments on proteins. This has led to significant cost and time savings in drug discovery. The UCL-hosted online CATH database receives around 10,000 unique visitors per month, and is a partner in InterPro — the most frequently accessed protein function annotation server available.
The UoA research enabled a step increase in the technical and commercial capabilities of Atlantic Geomatics (UK) Ltd (AGUK, Cumbria) and the development of a postal addressing solution for the Government of Gibraltar (GoG). The beneficiaries and benefits included: AGUK who secured a contract safeguarding jobs and opening new international markets. Moreover, the GoG now have a definitive solution for legislation to replace their manual, multiple and inconsistent address lists by a spatially-based official address register (OAR) incorporating geographical information thereby enabling the people of Gibraltar to receive enhanced services (e.g. postal, emergency, utilities) from a centrally managed OAR.
The advanced information management research of the Department of Digital Humanities (DDH) has led to a better understanding of pollution processes in inland waterways and lakes. It has also improved the standard of water quality information that is available to government and regulatory authorities. The information management framework which DDH has provided supports government-funded activities to improve environmental standards and has helped ensure that the UK Environment Agency is able to comply with the EU's Water Framework Directive, reducing the risk of financial penalties for non-compliance. Moreover, key and accurate evidence about water quality has been made freely available to beneficiaries, including governmental and non-governmental agencies, farmers and land managers, and the general public.
The research in this case study has pioneered knowledge management technology. It has had major impact on drug discovery and translational medicine and is widely adopted in the pharmaceutical and healthcare industries. The impacts are:
There is growing evidence that official population statistics based on the decennial UK Census are inaccurate at the local authority level, the fundamental administrative unit of the UK. The use of locally-available administrative data sets for counting populations can result in more timely and geographically more flexible data which are more cost-effective to produce than the survey-based Census. Professor Mayhew of City University London has spent the last 13 years conducting research on administrative data and their application to counting populations at local level. This work has focused particularly on linking population estimates to specific applications in health and social care, education and crime. Professor Mayhew developed a methodology that is now used as an alternative to the decennial UK Census by a large number of local councils and health care providers. They have thereby gained access to more accurate, detailed and relevant data which have helped local government officials and communities make better policy decisions and save money. The success of this work has helped to shape thinking on statistics in England, Scotland and Northern Ireland and has contributed to the debate over whether the decennial UK Census should be discontinued.