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Since 2004, researchers in Cambridge have developed a series of generic and flexible models to predict the spread of plant diseases in agricultural, horticultural and natural environments. These now underpin policy decisions relating to the management and control of a number of such diseases, including sudden oak death and ash dieback in the UK (by Defra and the Forestry Commission), and sudden oak death in the US (by the United States Department of Agriculture). This has subsequently had an impact on how practitioners manage these diseases in the field, and on the environment through the implementation of disease mitigation strategies. In the case of ash dieback, the Cambridge work has also directly contributed to public involvement in mapping the spread of the disease.
Impact: BEAST software has widespread applications with impacts on public health policy, service provision and awareness, and in other contexts such as commercial disputes and criminal cases.
Beneficiaries: Public agencies such as health bodies and criminal courts; ultimately, global and local populations subject to infectious disease epidemic and pandemic outbreaks in which BEAST is used to inform the response.
Significance and Reach: BEAST is critical software that has been used to understand the spread of and to inform the response to global pandemics such as H1N1 swine-flu. It is also used to determine disease origin and transmission issues in specific situations (e.g. in criminal cases). The reach of this software is therefore both global and local.
Attribution: Rambaut (UoE) co-led the phylogenetic research and developed BEAST with Drummond (Auckland, NZ). The subsequent epidemic and pandemic analyses were variously led by Rambaut and Pybus (Oxford) and by Ferguson (Imperial College London).
Small area estimation (SAE) describes the use of Bayesian modelling of survey and administrative data in order to provide estimates of survey responses at a much finer level than is possible from the survey alone. Over the recent past, academic publications have mostly targeted the development of the methodology for SAE using small-scale examples. Only predictions on the basis of realistically sized samples have the potential to impact on governance and our contribution is to fill a niche by delivering such SAEs on a national scale through the use of a scaling method. The impact case study concerns the use of these small area predictions to develop disease-level predictions for some 8,000 GPs in England and so to produce a funding formula for use in primary care that has informed the allocation of billions of pounds of NHS money. The value of the model has been recognised in NHS guidelines. The methodology has begun to have impact in other areas, including the BIS `Skills for Life' survey.
The WinBUGS software (and now OpenBUGS software), developed initially at Cambridge from 1989-1996 and then further at Imperial from 1996-2007, has made practical MCMC Bayesian methods readily available to applied statisticians and data analysts. The software has been instrumental in facilitating routine Bayesian analysis of a vast range of complex statistical problems covering a wide spectrum of application areas, and over 20 years after its inception, it remains the leading software tool for applied Bayesian analysis among both academic and non-academic communities internationally. WinBUGS had over 30,000 registered users as of 2009 (the software is now open-source and users are no longer required to register) and a Google search on the term `WinBUGS' returns over 205,000 hits (over 42,000 of which are since 2008) with applications as diverse as astrostatistics, solar radiation modelling, fish stock assessments, credit risk assessment, production of disease maps and atlases, drug development and healthcare provider profiling.
Mathematical modelling of livestock infections and disease control policies is an important part of planning for future epidemics and informing policy during an outbreak of infectious disease. Researchers in the Mathematics Institute, University of Warwick, are considered to be at the cutting-edge of developing policy-orientated mathematical modelling for a number of livestock infections. Such models have been used to inform government policy for foot-and-mouth disease (FMD) and a range of other infections including bovine tuberculosis (bTB) and bee infections. From 2008, their work with responsible national and international agencies has focused on statistical inference from early outbreak data, formulating models and inferring parameter values for bTB infection spread within and between farms, developing predictive models of FMD outbreaks in the USA, and extending such models to areas where FMD is endemic. This research has helped to shape policy and determined how policy-makers perceive and use predictive models in real-time.
Onchocerciasis (river blindness) is a debilitating disease of major public health importance in the wet tropics. The African Programme for Onchocerciasis Control (APOC) seeks to control or eliminate the disease in 19 countries. Accurate mapping of Loiasis (eye-worm) was a requirement for implementation of APOC's mass-treatment prophylactic medication programme in order to mitigate against serious adverse reactions to the Onchocerciasis medication in areas also highly endemic for Loiasis. Model-based geostatistical methods developed at Lancaster were used to obtain the required maps and contributed to a change in practice of APOC in a major health programme in Africa. Our maps are used to plan the delivery of the mass-treatment programme to rural communities throughout the APOC countries, an estimated total population of 115 million.
Since 2008, statistical research at the University of Bristol has significantly influenced policies, practices and tools aimed at evaluating and promoting the quality of institutional and student learning in the education sector in the UK and internationally. These developments have also spread beyond the education sector and influence the inferential methods employed across government and other sectors. The underpinning research develops methodologies and a much-used suite of associated software packages that allows effective inference from complicated data structures, which are not well-modelled using traditional statistical techniques that assume homogeneity across observational units. The ability to analyse complicated data (such as pupil performance measures when measured alongside school, classroom, context and community factors) has resulted in a significant transformation of government and institutional policies and their practices in the UK, and recommendations in Organisation for Economic Co-operation and Development (OECD) policy documents. These techniques for transforming complex data into useful evidence are well-used across the UK civil service, with consequent policy shifts in areas such as higher education admissions and the REF2014 equality and diversity criteria.
Research on novel statistical methods for disease surveillance and influenza vaccine effectiveness has led to the development of a suite of automatic systems for detecting outbreaks of infectious diseases at Health Protection Scotland (HPS). This work has improved the public health response and helped to reduce costs in Scotland and also in the wider UK and EU by providing real-time early warning of disease outbreaks and timely estimates of the effectiveness of the influenza vaccine. This research, commissioned by the Scottish Government, through HPS, and also the UK National Institute for Health Research (NIHR) and the European Centres for Disease Control (ECDC), but used in a wider context by many others, formed the basis for the HPS response to the H1N1 Influenza Pandemic and monitoring of the effects of Influenza Vaccines.
Imperial College researchers have developed methods and indicators for highlighting potential variations in healthcare performance and safety using routinely collected health data. Analytical tools based on our methodological research are used by managers and clinicians in over two thirds of NHS hospital trusts, and hospitals throughout the world. The results of our analyses helped detect problems at Mid Staffordshire NHS Foundation Trust and triggered the initial investigation and subsequent public inquiry with wide ranging recommendations based on the recognition of their value and their use in enhancing the safety of healthcare.